RNA id: TU1603837


Basic Information

Item Value
RNA id TU1603837
length 236
lncRNA type read_through
GC content 0.37
exon number 2
gene id G1404368
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68327646 ~ 68327903 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGTGAGACAGTGAGGAAAATTAAAATACAGAATTCTGACTCAAATCAAACTTTCAGGCCATGTGTAATTTGAGAATAAGGCATGAATCATACAATCCAATCTGCTTTATGGATGTCATTTTGGGAAACTGTTGTCTTTATCCTGGTTCATCACTTCGCAACAATATAGGGAAAACaacagatctggaagaatcttaCTTTGGCTCTAATCAGAGTCCACAACCAAATCTCACACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1603836 lncRNA downstream 1634 68325731 ~ 68326012 (-) True G1404367
TU1603448 lncRNA downstream 111398 68216018 ~ 68216248 (-) True G1404061
TU1603443 lncRNA downstream 113540 68213291 ~ 68214106 (-) False G1404059
TU1603445 lncRNA downstream 113540 68213291 ~ 68214106 (-) False G1404059
TU1603446 lncRNA downstream 113540 68213291 ~ 68214106 (-) True G1404059
TU1603842 lncRNA upstream 6638 68334541 ~ 68334953 (-) True G1404373
TU1603854 lncRNA upstream 31470 68359373 ~ 68359652 (-) True G1404385
TU1603782 lncRNA upstream 41080 68368983 ~ 68369804 (-) True G1404321
TU1603869 lncRNA upstream 70216 68398119 ~ 68398401 (-) True G1404399
TU1603891 lncRNA upstream 106094 68433997 ~ 68434336 (-) True G1404418
XR_005036608.1 mRNA downstream 55499 68265437 ~ 68272147 (-) False LOC110492615
XM_021567043.2 mRNA downstream 55499 68265441 ~ 68272147 (-) True LOC110492615
XM_036947643.1 mRNA downstream 62285 68249045 ~ 68265361 (-) True LOC110492616
XM_036947641.1 mRNA downstream 62301 68249045 ~ 68265345 (-) False LOC110492616
NM_001124722.1 mRNA downstream 143227 68183225 ~ 68184419 (-) True id1
XM_021567048.2 mRNA upstream 35271 68363174 ~ 68367397 (-) True LOC110492621
XM_036947635.1 mRNA upstream 42092 68369995 ~ 68378994 (-) False LOC110491166
XM_036947636.1 mRNA upstream 42092 68369995 ~ 68378994 (-) False LOC110491166
XM_036947637.1 mRNA upstream 42092 68369995 ~ 68381432 (-) False LOC110491166
XM_036947633.1 mRNA upstream 42092 68369995 ~ 68383907 (-) False LOC110491166
TU1602806 other downstream 883467 67443421 ~ 67444179 (-) True G1403498
TU1601943 other downstream 1832979 66484901 ~ 66494667 (-) False G1402707
TU1601912 other downstream 1901324 66425551 ~ 66426322 (-) False G1402686
TU1601915 other downstream 1901324 66425551 ~ 66426322 (-) True G1402686
TU1600365 other downstream 2573036 65720507 ~ 65754610 (-) True LOC110492562
TU1604092 other upstream 463286 68791189 ~ 68795025 (-) True LOC118939478
TU1604570 other upstream 875383 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 949924 69277827 ~ 69280359 (-) True G1405016
TU1604821 other upstream 1189852 69517755 ~ 69518113 (-) True G1405172
TU1605761 other upstream 1750754 70078657 ~ 70095541 (-) True G1405917

Expression Profile