RNA id: TU1603685


Basic Information

Item Value
RNA id TU1603685
length 2249
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id G1404256
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68619563 ~ 68621847 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATGCCCATGGAGGGCTGTCCCAGGCTGGCCCTCCTCTCCCACTTGCCCTCGTCAGGGTTGTAGACCTCCACGGAGGACAGGGGGCTCTGCTGGAGGTCCATGCCCCCCATCACCATCACCTGACCCCCCAGGGCCACCGCCGACGCCCCCGCCCGGGCTGTAGGGAGCGGAGGAAGCTGGGTCCATGTCTGGCTCTCTATGTCCAGCACCTCAGCAGTATCTAAAGGCAGGCCTGTTTCATTGCATCCTCCCAGAACATAGAGCAGGCCACCGTGGAACACAGGGGTGCAGTAGACCCTGCATgaggacatgggggggaacacCTCCCAGTACAGGGACTTGACAGGGCTCACTGCCATCTCAAGTACAGGCATCTCTCCTGAGGCTGGCAGTGGTGGTGGGTCATTACAACACGGATGGGGTGGGGCGGGGGGATaaaaaacagacaaacaaaaacaacaaagacagaagcaggggCACTGCGGAACAGCCTCCTTTCTTGCTGCGCTGCTACATGATGCCCTGTCTGAAACGAGAGAgggcgtgagagagagaaagagagagagagagagagagagagagagagggagggacagagagatagacggggggagggacagagagagagagagggagtgtgacagagagagagagaaagagcgagagagtgacagagagagggagagagagagagagagagggggagggactaCCTCAGCAATCTGCCAGatgcctccactccactccaccaaaTGATTTATTCATTTATTACTGATCTTTTAGTGCAGGGGACCATCTGCCCTTTCTTTCCCTGTATTCACTCCATCCAAGGGCTTTTTATTTTGGTTAAAAATCACTGCAGTTGATTAGTGTGTGCTACTCTCCAGGGAGGAATATGTTTTGTGAAGGCTTCCTGTGGCGAACACACTTAAAAGGTGTGCCTGGCTTTATGCATAATCCCTGTGAAACGTTATTGTCAAGTGGGAGATTGAGTAAAATCATAAAACTGGGGAGTAAAATGAACCTGTGATCACGTTCTCAGCCAAAGGCAATTATCATGGGCTCCAGCTACTATATGAATCGGGTGAAGAGGGTAATGACAAAACGAAGAAAAACCAAACAAAGTCTTTAAATGAAAACTCTTGAGTATAATGGGAACAAGCTCTCGGGGTCAGACAGAATCTTTCTAATCAGACCAAAACGCTAAATCCCAGAAGGCAGCTGTCAACGGTCAACTGGGGCTGAAGAGTACCGTCTGTCCCACTTGGACACAGCGAGGCTCCCACAGAGATACCTGGCCTGTGTAGAAGAAGAGAAAACAGCCAGGCCTCTGACCCTGTGGAAGATTCAGCCGTGGACAGCCAGCGCTGTGACATTTACAGTCAGGGCCAGGCCAGGAGGTCCAGGGGGGAGGTAGAGATCTGGAACAGCACGACCCACTCCAAAGGTCACTGCTTCCACTGGGACTTTCAGGAATCGGATCACACTGACAGAAAGTGTCATTGGCGCACAAGCATTGTTAATTATTTAAACGGAGAGAGTACGTGACAGGAATGGGTGTTGTGGAAGGAGAGGTAAATAAAAGGTATAGGGAAGAGAAGTGAAAAAAGAGGGAGATACAAGTTTTTAAAAAGatagagggggggagacaggaaAAGACAGGTATGGGTAGATGTAGAGAGATCCTTAGAGACACGCTGGTGCGAGGCTACTGGAGTCTGAGTCCATCTAAAACAGCTATGATGAGAATGCAGGGAGTAGTTTGTCGACTCGGAGAGAGCGGACACACAGATATCTCAAATGAGATCCCCTGGTGTGTTTACAGAATGAGGAGGCTCTATCAGAGGAAACCCCCCCGTCAGCTTCTGCACAGCCTTCACAGGTGTATCTTCCTCTTAGGATTTGTGTGTATCCATCTCGGACACACTCTGAACACTCCGGAACTCTGGGCCTTGTTGCTCAATTACAAGGTACCTACGTATTCCTGAACAGCACACTAGGTCTACGTGTTAGTTCAGTTGAGACATCATTAAACAAACAAATGAGCTGGAAACACAACGCCTTTTCAGCACTGCAGGCAAAACTGTTCGCCAGAGGTGAAAGCAAACTTTTTTCCCCCTTCGTCATCAGAGTCGGTGGATTAGAAATGCAGGAGGAGTGTTATAGAGACAGGACTTGTTTGTATTCCAGGAGCAGAACTCTGACTCTCCCACGGCGATCTCTTGTTGCTGTTACTCCGTGGCTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1603651 lncRNA upstream 79806 68539477 ~ 68539757 (+) True G1404234
TU1603650 lncRNA upstream 80413 68538941 ~ 68539150 (+) True G1404233
TU1603649 lncRNA upstream 81224 68538131 ~ 68538339 (+) True G1404232
TU1603595 lncRNA upstream 173032 68445266 ~ 68446531 (+) True G1404179
TU1603596 lncRNA upstream 173905 68444379 ~ 68445658 (+) False G1404179
TU1603688 lncRNA downstream 7602 68629449 ~ 68629652 (+) True G1404259
TU1603704 lncRNA downstream 36506 68658353 ~ 68672602 (+) True G1404273
TU1603702 lncRNA downstream 54175 68676022 ~ 68678971 (+) True G1404271
TU1603711 lncRNA downstream 58178 68680025 ~ 68680497 (+) True G1404280
TU1603720 lncRNA downstream 61172 68683019 ~ 68686885 (+) True G1404283
XM_036947632.1 mRNA upstream 187819 68422113 ~ 68431744 (+) True LOC110492623
XM_036947640.1 mRNA upstream 214372 68396762 ~ 68405191 (+) False LOC110492622
XM_036947639.1 mRNA upstream 214372 68396763 ~ 68405191 (+) True LOC110492622
XM_021564513.2 mRNA upstream 262394 68348773 ~ 68357169 (+) True LOC110491164
XR_005036609.1 mRNA upstream 274550 68301028 ~ 68345013 (+) False LOC110492620
XM_021567053.2 mRNA downstream 282963 68904810 ~ 68909231 (+) True LOC110492628
XM_021567054.2 mRNA downstream 291040 68912887 ~ 68915377 (+) False LOC110492629
XM_036947648.1 mRNA downstream 292046 68913893 ~ 68915383 (+) True LOC110492629
XM_036947649.1 mRNA downstream 310286 68932133 ~ 68934318 (+) True LOC118939574
XM_021567057.2 mRNA downstream 335718 68957565 ~ 68961010 (+) True LOC110492631
TU1603494 other upstream 276068 68319655 ~ 68343495 (+) True LOC110492620
TU1603513 other upstream 329477 68289515 ~ 68290086 (+) False G1404105
TU1602989 other upstream 842072 67773556 ~ 67777491 (+) True G1403655
TU1602769 other upstream 879861 67738962 ~ 67739702 (+) True G1403463
TU1602718 other upstream 966116 67653068 ~ 67653447 (+) True G1403412
TU1603714 other downstream 59599 68681446 ~ 68681977 (+) True G1404281
TU1604245 other downstream 487867 69109714 ~ 69113350 (+) False G1404700
TU1604341 other downstream 623698 69245545 ~ 69253709 (+) True G1404785
TU1604359 other downstream 683849 69305696 ~ 69312263 (+) False fkbp1ab
TU1604360 other downstream 683849 69305696 ~ 69312263 (+) True fkbp1ab

Expression Profile