RNA id: TU1603711



Basic Information


Item Value
RNA id TU1603711
length 324
lncRNA type antisense_over
GC content 0.58
exon number 2
gene id G1404280
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68680025 ~ 68680497 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CATGCCTCCTCTGGTGCCAGCACCTCAGGCCTAGTGAAGAGGTTGAGGCACTGCTCCAGGGTGAAGTGTCCAGCCCTGGCTGTCTCGTTGACCGACCCAGGGTCCTCTTCAAATTCCAGCTCCTTGGACCGAACCAGGACGTACTCCTTGAGACGCTCGTTGTTCTTCCACACCAGCTCCAGGCTGGAGTCCTCAGGGAGGTCCAGAACGGCCTCTTCTTTCCTCCAGTGTCTGCTCCTTGCTGTTGGAGTGGAGGATGGTGATGTAGAACTGAGAGGTGTGGCTGGACGCAGACTCTGATGGTTGCTGGTAGCCGGTCACAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1603702 lncRNA upstream 1054 68676022 ~ 68678971 (+) True G1404271
TU1603704 lncRNA upstream 7423 68658353 ~ 68672602 (+) True G1404273
TU1603688 lncRNA upstream 50373 68629449 ~ 68629652 (+) True G1404259
TU1603685 lncRNA upstream 58178 68619563 ~ 68621847 (+) True G1404256
TU1603651 lncRNA upstream 140268 68539477 ~ 68539757 (+) True G1404234
TU1603720 lncRNA downstream 2522 68683019 ~ 68686885 (+) True G1404283
TU1604108 lncRNA downstream 206538 68887035 ~ 68890355 (+) True G1404609
TU1604112 lncRNA downstream 210898 68891395 ~ 68891650 (+) True G1404613
TU1604114 lncRNA downstream 212561 68893058 ~ 68893827 (+) True G1404615
TU1604151 lncRNA downstream 238553 68919050 ~ 68919289 (+) True G1404637
XM_036947632.1 mRNA upstream 248281 68422113 ~ 68431744 (+) True LOC110492623
XM_036947640.1 mRNA upstream 274834 68396762 ~ 68405191 (+) False LOC110492622
XM_036947639.1 mRNA upstream 274834 68396763 ~ 68405191 (+) True LOC110492622
XM_021564513.2 mRNA upstream 322856 68348773 ~ 68357169 (+) True LOC110491164
XR_005036609.1 mRNA upstream 335012 68301028 ~ 68345013 (+) False LOC110492620
XM_021567053.2 mRNA downstream 224313 68904810 ~ 68909231 (+) True LOC110492628
XM_021567054.2 mRNA downstream 232390 68912887 ~ 68915377 (+) False LOC110492629
XM_036947648.1 mRNA downstream 233396 68913893 ~ 68915383 (+) True LOC110492629
XM_036947649.1 mRNA downstream 251636 68932133 ~ 68934318 (+) True LOC118939574
XM_021567057.2 mRNA downstream 277068 68957565 ~ 68961010 (+) True LOC110492631
TU1603494 other upstream 336530 68319655 ~ 68343495 (+) True LOC110492620
TU1603513 other upstream 389939 68289515 ~ 68290086 (+) False G1404105
TU1602989 other upstream 902534 67773556 ~ 67777491 (+) True G1403655
TU1602769 other upstream 940323 67738962 ~ 67739702 (+) True G1403463
TU1602718 other upstream 1026578 67653068 ~ 67653447 (+) True G1403412
TU1603714 other downstream 949 68681446 ~ 68681977 (+) True G1404281
TU1604245 other downstream 429217 69109714 ~ 69113350 (+) False G1404700
TU1604341 other downstream 565048 69245545 ~ 69253709 (+) True G1404785
TU1604359 other downstream 625199 69305696 ~ 69312263 (+) False fkbp1ab
TU1604360 other downstream 625199 69305696 ~ 69312263 (+) True fkbp1ab

Expression Profile