RNA id: TU1604112


Basic Information

Item Value
RNA id TU1604112
length 256
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G1404613
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68891395 ~ 68891650 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAACTCCACAATACTTCAAATTATAGATCTTTATTCAACAGCAATGCATTGTATGGCATAGATTTATGTCTGAAAATGTGACATCACAATCAGTTGATGAATAAACCCTGAAAGCAATCATTTACACAGATTACGTAGTGCATAAAATAATATGGGTTCATTATGTCAATGCAAAATCTAACCAGAACACTTTTGCTTCAATTGGAAGCAAAAACAGAATGAAAGACAATAGAAATACTAAGGACAATTTTATAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1604108 lncRNA upstream 1040 68887035 ~ 68890355 (+) True G1404609
TU1603720 lncRNA upstream 204510 68683019 ~ 68686885 (+) True G1404283
TU1603711 lncRNA upstream 210898 68680025 ~ 68680497 (+) True G1404280
TU1603702 lncRNA upstream 212424 68676022 ~ 68678971 (+) True G1404271
TU1603704 lncRNA upstream 218793 68658353 ~ 68672602 (+) True G1404273
TU1604114 lncRNA downstream 1408 68893058 ~ 68893827 (+) True G1404615
TU1604151 lncRNA downstream 27400 68919050 ~ 68919289 (+) True G1404637
TU1604154 lncRNA downstream 31813 68923463 ~ 68923913 (+) True G1404640
TU1604158 lncRNA downstream 33354 68925004 ~ 68925243 (+) True G1404644
TU1604167 lncRNA downstream 38928 68930578 ~ 68931336 (+) True G1404653
XM_036947632.1 mRNA upstream 459651 68422113 ~ 68431744 (+) True LOC110492623
XM_036947640.1 mRNA upstream 486204 68396762 ~ 68405191 (+) False LOC110492622
XM_036947639.1 mRNA upstream 486204 68396763 ~ 68405191 (+) True LOC110492622
XM_021564513.2 mRNA upstream 534226 68348773 ~ 68357169 (+) True LOC110491164
XR_005036609.1 mRNA upstream 546382 68301028 ~ 68345013 (+) False LOC110492620
XM_021567053.2 mRNA downstream 13160 68904810 ~ 68909231 (+) True LOC110492628
XM_021567054.2 mRNA downstream 21237 68912887 ~ 68915377 (+) False LOC110492629
XM_036947648.1 mRNA downstream 22243 68913893 ~ 68915383 (+) True LOC110492629
XM_036947649.1 mRNA downstream 40483 68932133 ~ 68934318 (+) True LOC118939574
XM_021567057.2 mRNA downstream 65915 68957565 ~ 68961010 (+) True LOC110492631
TU1603714 other upstream 209418 68681446 ~ 68681977 (+) True G1404281
TU1603494 other upstream 547900 68319655 ~ 68343495 (+) True LOC110492620
TU1603513 other upstream 601309 68289515 ~ 68290086 (+) False G1404105
TU1602989 other upstream 1113904 67773556 ~ 67777491 (+) True G1403655
TU1602769 other upstream 1151693 67738962 ~ 67739702 (+) True G1403463
TU1604245 other downstream 218064 69109714 ~ 69113350 (+) False G1404700
TU1604341 other downstream 353895 69245545 ~ 69253709 (+) True G1404785
TU1604359 other downstream 414046 69305696 ~ 69312263 (+) False fkbp1ab
TU1604360 other downstream 414046 69305696 ~ 69312263 (+) True fkbp1ab
TU1604386 other downstream 472871 69364521 ~ 69369376 (+) True G1404827

Expression Profile