RNA id: TU1604137


Basic Information

Item Value
RNA id TU1604137
length 1511
lncRNA type antisense_over
GC content 0.46
exon number 3
gene id G1404628
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68913629 ~ 68915352 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCAAACAATTTATTATTACAGTGACGTGATTGGTCTAAGCAGCGATCACAAGCAGCCCATTAGACTACGTCCTGACTAAGCTCCCAGCTTCAGGCTGTTGTGCTGAGTGCCTATGATGCACTGAGCCATTCTGTAGAGTTGCAGTTATTTTCACATCCCGGGCCTTGCCCACCTAATTTGGGGAACAGCAGCAGCTTGGCGTCAATCACAAGCAGGAAGGGCTCAAAAGCTCTGGTAACTTCCACCAGGTGCCTGTCGAACAGGTCTAGTTGTTTTTTGAGGTGGATGAACGGGGGCAATGGACCAGATAGGGAGGGTGAGTTGGAGTGGGTCAATAGAGGATCGGAATAGGTCAGCAGGGGTCAAAGGAAGGAGGAATGTCCATGAGTCTCCGTTTTACTGCACATTTTCCATCATCTTGAGGAATTCTGAAAAATTAATCCATTAtgaacaaaacatttaaatgtatttcagGGTCAATTAAAAAGTCCCTCAGTATCCATTATGAAAATGCAGGTCGTAGGCTAATTAGCCAATCAGCACCACAGTTATAATCAAAGGCATCATCCCTATGTCCTACCGTCAAAGTCCAGCATGCCATCAGCGTTCTTGTCTCCATCCTTCAGCAGCTCATCAATTTCCTCCTCTGAGATTTGTTCTCCAGAGCTGCGGATGATGATGGCGAACTCTTCTCTGTCGATATAGCCGTCGGCATTTTGTCGAACACACGGAAACATTCCGCTAACTCTCCCTCGGACTTTCCGGCCTGGTCCTCCTTTAGGAGCCTCACCATCATGACCAAGAACTCCTCGAAGTCGATGGTTCCGCTACCTGAGGTGAAGGGCCAGATTACGCATCACGCGCAAATAAAAAACTACTACAGACAATGTTAACAGGCGCGCGAATAAAAAACTACTACAGACAATGTTAACAGGCGCGCGAATAAAAAACTACTACAGACAATGTTAACAGGTACTTATGAAACACTGGTCACCTGAGCACAACACGGGCATTGGTTTTACCAAAACGCAAGTGTTCCATttaggtttatatatacacacattcatGTAGGCTAACATGAGTCAATTTTAGATTCAGCAGTTTCTCACCATCCTCATCGACCTCCTCAATGATTTCATCCAACTCCTCTCTTGTCGGATTCTGGCCCAACATCCTCATGACCTGACCCAATTCCTTGGTGCTGATATCACCGCCACCGTCGGTGTCAAACATGTCGAAGGCAGCCTTGAACTCTTAAGCATCTCCTCGCTCAAGTATGAGCGGGCCTCCTGTTGCGCGTCAGTCTAGAGGAAAAACAGCGCCACGTGTGTCAAGTCATTGTAGTGACCATCTCTCCAAgacaacatatatatttttttgaagcAAAAGTTATTGGCTATTAGCATTCGTGTGTTTGTATTGACAGTCACACGTGCCCTGCCCAAAAAGGGTAGGTTAAGCCTATACGGCCTACGGACAGCTCTTAGGCCAAGTGAAAATGTGCCATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1604147 lncRNA downstream 6378 68904808 ~ 68907251 (-) True G1404634
TU1604123 lncRNA downstream 12137 68900364 ~ 68901492 (-) True G1404624
TU1604106 lncRNA downstream 27223 68886175 ~ 68886406 (-) True G1404608
TU1604085 lncRNA downstream 124531 68788892 ~ 68789098 (-) True G1404588
TU1604024 lncRNA downstream 240095 68671413 ~ 68673534 (-) True LOC110492627
TU1604150 lncRNA upstream 2366 68917718 ~ 68917975 (-) True G1404636
TU1604156 lncRNA upstream 7507 68922859 ~ 68923213 (-) True G1404642
TU1604159 lncRNA upstream 8998 68924350 ~ 68924558 (-) True G1404645
TU1604162 lncRNA upstream 9948 68925300 ~ 68925538 (-) True G1404648
TU1604176 lncRNA upstream 20240 68935592 ~ 68937610 (-) True G1404661
XM_021564517.2 mRNA downstream 17509 68894981 ~ 68896120 (-) True LOC110491168
XM_036945858.1 mRNA downstream 120301 68791313 ~ 68793328 (-) False LOC118939478
XM_036947619.1 mRNA downstream 141376 68703920 ~ 68772253 (-) False LOC110492626
XM_036947620.1 mRNA downstream 141376 68703940 ~ 68772253 (-) True LOC110492626
XR_005036598.1 mRNA downstream 210026 68672839 ~ 68703603 (-) False LOC110492627
XM_021567055.2 mRNA upstream 224 68915576 ~ 68917426 (-) True LOC110492630
XM_036947659.1 mRNA upstream 197664 69113016 ~ 69122652 (-) False LOC110492636
XM_036947658.1 mRNA upstream 197664 69113016 ~ 69123466 (-) True LOC110492636
XM_036945796.1 mRNA upstream 439150 69354502 ~ 69379181 (-) True LOC110492644
XM_036947667.1 mRNA upstream 555064 69470416 ~ 69506016 (-) True LOC110491170
TU1604092 other downstream 118604 68791189 ~ 68795025 (-) True LOC118939478
TU1602806 other downstream 1469450 67443421 ~ 67444179 (-) True G1403498
TU1601943 other downstream 2418962 66484901 ~ 66494667 (-) False G1402707
TU1601912 other downstream 2487307 66425551 ~ 66426322 (-) False G1402686
TU1604570 other upstream 287934 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 362475 69277827 ~ 69280359 (-) True G1405016
TU1604821 other upstream 602403 69517755 ~ 69518113 (-) True G1405172
TU1605761 other upstream 1163305 70078657 ~ 70095541 (-) True G1405917
TU1605893 other upstream 1304525 70219877 ~ 70221256 (-) True LOC110492660

Expression Profile