RNA id: TU1604151


Basic Information

Item Value
RNA id TU1604151
length 240
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G1404637
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68919050 ~ 68919289 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATAACTTAATTGATCGATTGTCACAGAAACGTAAAAACAGATGTTTTTTTCCTATAAATGTCTAgcatacttttacaacctttgttTTGAGTAAAAATTCCAGTCTTGATTTGTTGGAATACATAAAACGTTTCAAATGCTATTTAAAGCGGTATAAATCAGTAACTAATTCAGTTGGTCACAGAAACATCAAACTAGGTGTGATTTATTTTATAAATGTCTAGCATACTTTTACAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1604114 lncRNA upstream 25223 68893058 ~ 68893827 (+) True G1404615
TU1604112 lncRNA upstream 27400 68891395 ~ 68891650 (+) True G1404613
TU1604108 lncRNA upstream 28695 68887035 ~ 68890355 (+) True G1404609
TU1603720 lncRNA upstream 232165 68683019 ~ 68686885 (+) True G1404283
TU1603711 lncRNA upstream 238553 68680025 ~ 68680497 (+) True G1404280
TU1604154 lncRNA downstream 4174 68923463 ~ 68923913 (+) True G1404640
TU1604158 lncRNA downstream 5715 68925004 ~ 68925243 (+) True G1404644
TU1604167 lncRNA downstream 11289 68930578 ~ 68931336 (+) True G1404653
TU1604177 lncRNA downstream 18400 68937689 ~ 68937994 (+) True G1404662
TU1604178 lncRNA downstream 18756 68938045 ~ 68938283 (+) True G1404663
XM_036947648.1 mRNA upstream 3667 68913893 ~ 68915383 (+) True LOC110492629
XM_021567054.2 mRNA upstream 3673 68912887 ~ 68915377 (+) False LOC110492629
XM_021567053.2 mRNA upstream 9819 68904810 ~ 68909231 (+) True LOC110492628
XM_036947632.1 mRNA upstream 487306 68422113 ~ 68431744 (+) True LOC110492623
XM_036947640.1 mRNA upstream 513859 68396762 ~ 68405191 (+) False LOC110492622
XM_036947649.1 mRNA downstream 12844 68932133 ~ 68934318 (+) True LOC118939574
XM_021567057.2 mRNA downstream 38276 68957565 ~ 68961010 (+) True LOC110492631
XM_036947652.1 mRNA downstream 42458 68961747 ~ 68970217 (+) False LOC110492632
XM_036947651.1 mRNA downstream 42741 68962030 ~ 68970217 (+) True LOC110492632
XM_021567059.2 mRNA downstream 54425 68973714 ~ 69006032 (+) False LOC110492634
TU1603714 other upstream 237073 68681446 ~ 68681977 (+) True G1404281
TU1603494 other upstream 575555 68319655 ~ 68343495 (+) True LOC110492620
TU1603513 other upstream 628964 68289515 ~ 68290086 (+) False G1404105
TU1602989 other upstream 1141559 67773556 ~ 67777491 (+) True G1403655
TU1602769 other upstream 1179348 67738962 ~ 67739702 (+) True G1403463
TU1604245 other downstream 190425 69109714 ~ 69113350 (+) False G1404700
TU1604341 other downstream 326256 69245545 ~ 69253709 (+) True G1404785
TU1604359 other downstream 386407 69305696 ~ 69312263 (+) False fkbp1ab
TU1604360 other downstream 386407 69305696 ~ 69312263 (+) True fkbp1ab
TU1604386 other downstream 445232 69364521 ~ 69369376 (+) True G1404827

Expression Profile