RNA id: TU1604156


Basic Information

Item Value
RNA id TU1604156
length 355
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1404642
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68922859 ~ 68923213 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttatctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtaggccagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtaggccagttgagaacacctttatttaaccaggtaggctagttgagaacacctttatttaaccaggtaggccagttgagaacacctttatttaaccaggtaggccagttgagaacaagttctcatttataactgcgacctggccaagataaagcaaagtgacaaaaaacaacacagagttacacatgggataaacaaaagtacagtcaataacacaatagaaaaatctatatacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1604150 lncRNA downstream 4884 68917718 ~ 68917975 (-) True G1404636
TU1604133 lncRNA downstream 7507 68913629 ~ 68915352 (-) False G1404628
TU1604159 lncRNA upstream 1137 68924350 ~ 68924558 (-) True G1404645
TU1604162 lncRNA upstream 2087 68925300 ~ 68925538 (-) True G1404648
TU1604176 lncRNA upstream 12379 68935592 ~ 68937610 (-) True G1404661
TU1604194 lncRNA upstream 25462 68948675 ~ 68948905 (-) True G1404678
TU1604198 lncRNA upstream 27422 68950635 ~ 68951041 (-) True G1404682
XM_021567055.2 mRNA downstream 5433 68915576 ~ 68917426 (-) True LOC110492630
XM_021564517.2 mRNA downstream 26739 68894981 ~ 68896120 (-) True LOC110491168
XM_036945858.1 mRNA downstream 129531 68791313 ~ 68793328 (-) False LOC118939478
XM_036947619.1 mRNA downstream 150606 68703920 ~ 68772253 (-) False LOC110492626
XM_036947659.1 mRNA upstream 189803 69113016 ~ 69122652 (-) False LOC110492636
XM_036947658.1 mRNA upstream 189803 69113016 ~ 69123466 (-) True LOC110492636
XM_036945796.1 mRNA upstream 431289 69354502 ~ 69379181 (-) True LOC110492644
XM_036947667.1 mRNA upstream 547203 69470416 ~ 69506016 (-) True LOC110491170
XR_005036611.1 mRNA upstream 648640 69571853 ~ 69575843 (-) True LOC118939576
TU1604092 other downstream 127834 68791189 ~ 68795025 (-) True LOC118939478
TU1602806 other downstream 1478680 67443421 ~ 67444179 (-) True G1403498
TU1601943 other downstream 2428192 66484901 ~ 66494667 (-) False G1402707
TU1601912 other downstream 2496537 66425551 ~ 66426322 (-) False G1402686
TU1604570 other upstream 280073 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 354614 69277827 ~ 69280359 (-) True G1405016
TU1604821 other upstream 594542 69517755 ~ 69518113 (-) True G1405172
TU1605761 other upstream 1155444 70078657 ~ 70095541 (-) True G1405917
TU1605893 other upstream 1296664 70219877 ~ 70221256 (-) True LOC110492660

Expression Profile