RNA id: TU1604158


Basic Information

Item Value
RNA id TU1604158
length 240
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1404644
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68925004 ~ 68925243 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggaccttgtgaagatgctggaggaaacgggtacaaaattatctatatccacagtaaaacaagtcctaaatcgacataacctgaaaggccgttcagcaaggaagaagccactgctccaaaaccgccataaaaatgccagactacagtttgcaactgcatatgaggacaaagatcgtactttatggagaaatgtcctctggtctgatgaaaccaaaatagaactgtttggccataatgacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1604154 lncRNA upstream 1091 68923463 ~ 68923913 (+) True G1404640
TU1604151 lncRNA upstream 5715 68919050 ~ 68919289 (+) True G1404637
TU1604114 lncRNA upstream 31177 68893058 ~ 68893827 (+) True G1404615
TU1604112 lncRNA upstream 33354 68891395 ~ 68891650 (+) True G1404613
TU1604108 lncRNA upstream 34649 68887035 ~ 68890355 (+) True G1404609
TU1604167 lncRNA downstream 5335 68930578 ~ 68931336 (+) True G1404653
TU1604177 lncRNA downstream 12446 68937689 ~ 68937994 (+) True G1404662
TU1604178 lncRNA downstream 12802 68938045 ~ 68938283 (+) True G1404663
TU1604190 lncRNA downstream 21890 68947133 ~ 68947365 (+) True G1404674
TU1604206 lncRNA downstream 26896 68952139 ~ 68952402 (+) True G1404685
XM_036947648.1 mRNA upstream 9621 68913893 ~ 68915383 (+) True LOC110492629
XM_021567054.2 mRNA upstream 9627 68912887 ~ 68915377 (+) False LOC110492629
XM_021567053.2 mRNA upstream 15773 68904810 ~ 68909231 (+) True LOC110492628
XM_036947632.1 mRNA upstream 493260 68422113 ~ 68431744 (+) True LOC110492623
XM_036947639.1 mRNA upstream 519813 68396763 ~ 68405191 (+) True LOC110492622
XM_036947649.1 mRNA downstream 6890 68932133 ~ 68934318 (+) True LOC118939574
XM_021567057.2 mRNA downstream 32322 68957565 ~ 68961010 (+) True LOC110492631
XM_036947652.1 mRNA downstream 36504 68961747 ~ 68970217 (+) False LOC110492632
XM_036947651.1 mRNA downstream 36787 68962030 ~ 68970217 (+) True LOC110492632
XM_021567059.2 mRNA downstream 48471 68973714 ~ 69006032 (+) False LOC110492634
TU1603714 other upstream 243027 68681446 ~ 68681977 (+) True G1404281
TU1603494 other upstream 581509 68319655 ~ 68343495 (+) True LOC110492620
TU1603513 other upstream 634918 68289515 ~ 68290086 (+) False G1404105
TU1602989 other upstream 1147513 67773556 ~ 67777491 (+) True G1403655
TU1602769 other upstream 1185302 67738962 ~ 67739702 (+) True G1403463
TU1604245 other downstream 184471 69109714 ~ 69113350 (+) False G1404700
TU1604341 other downstream 320302 69245545 ~ 69253709 (+) True G1404785
TU1604359 other downstream 380453 69305696 ~ 69312263 (+) False fkbp1ab
TU1604360 other downstream 380453 69305696 ~ 69312263 (+) True fkbp1ab
TU1604386 other downstream 439278 69364521 ~ 69369376 (+) True G1404827

Expression Profile