RNA id: TU1604208



Basic Information


Item Value
RNA id TU1604208
length 232
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1404687
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 68951658 ~ 68951889 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gGTTAAAATATAGGAAAACCTGTCACAATCACATTCTGACAAGCTTGAACTGTACTGGATGTAAAATACAGCTGAACTATGTAGCTACTGTTGACTATGTAGCAACTGTTGACTATGTATCTACTGTCAACTATGTAGCAACTGTCGACGATGTATCTACTGTCAACTATGTAGCAACTGTTGACTATGTATCTACTGTCAACTATGTAGCAACTGTTGACTATGTATCTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1604198 lncRNA downstream 617 68950635 ~ 68951041 (-) True G1404682
TU1604194 lncRNA downstream 2753 68948675 ~ 68948905 (-) True G1404678
TU1604176 lncRNA downstream 14048 68935592 ~ 68937610 (-) True G1404661
TU1604162 lncRNA downstream 26120 68925300 ~ 68925538 (-) True G1404648
TU1604159 lncRNA downstream 27100 68924350 ~ 68924558 (-) True G1404645
TU1604212 lncRNA upstream 5713 68957602 ~ 68959350 (-) True G1404691
TU1604441 lncRNA upstream 53688 69005577 ~ 69006178 (-) True G1404866
TU1604471 lncRNA upstream 73070 69024959 ~ 69025702 (-) True G1404892
TU1604479 lncRNA upstream 79304 69031193 ~ 69033156 (-) True G1404897
TU1604481 lncRNA upstream 83241 69035130 ~ 69036007 (-) True G1404898
XM_021567055.2 mRNA downstream 34232 68915576 ~ 68917426 (-) True LOC110492630
XM_021564517.2 mRNA downstream 55538 68894981 ~ 68896120 (-) True LOC110491168
XM_036945858.1 mRNA downstream 158330 68791313 ~ 68793328 (-) False LOC118939478
XM_036947619.1 mRNA downstream 179405 68703920 ~ 68772253 (-) False LOC110492626
XM_036947659.1 mRNA upstream 161127 69113016 ~ 69122652 (-) False LOC110492636
XM_036947658.1 mRNA upstream 161127 69113016 ~ 69123466 (-) True LOC110492636
XM_036945796.1 mRNA upstream 402613 69354502 ~ 69379181 (-) True LOC110492644
XM_036947667.1 mRNA upstream 518527 69470416 ~ 69506016 (-) True LOC110491170
XR_005036611.1 mRNA upstream 619964 69571853 ~ 69575843 (-) True LOC118939576
TU1604092 other downstream 156633 68791189 ~ 68795025 (-) True LOC118939478
TU1602806 other downstream 1507479 67443421 ~ 67444179 (-) True G1403498
TU1601943 other downstream 2456991 66484901 ~ 66494667 (-) False G1402707
TU1601912 other downstream 2525336 66425551 ~ 66426322 (-) False G1402686
TU1604570 other upstream 251397 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 325938 69277827 ~ 69280359 (-) True G1405016
TU1604821 other upstream 565866 69517755 ~ 69518113 (-) True G1405172
TU1605761 other upstream 1126768 70078657 ~ 70095541 (-) True G1405917
TU1605893 other upstream 1267988 70219877 ~ 70221256 (-) True LOC110492660

Expression Profile