RNA id: TU1604479



Basic Information


Item Value
RNA id TU1604479
length 238
lncRNA type antisense_over
GC content 0.56
exon number 2
gene id G1404897
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 69031193 ~ 69033156 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGCTGTGTCTGCACTGGCAAACTCCCCCTGTCCCTGGTTACACTCCAGGTATCGGGCAGCAAACTTCTCCATGAGCCTGTCAATCTTCTGGGCCTCTCCAGGGAGCCGGAAGCCCTCCAGGAAAGCCCTCAGAGCAGAGACAAAGTCGCGACCACAGAAGTCCAGCTGGTCCACATAGTTGTACATCACCTCCTTGTTGAAACGGATATTCTCCCCCAGGTACTCCCCTACCTGTgtc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1604471 lncRNA downstream 5491 69024959 ~ 69025702 (-) True G1404892
TU1604441 lncRNA downstream 25015 69005577 ~ 69006178 (-) True G1404866
TU1604212 lncRNA downstream 71843 68957602 ~ 68959350 (-) True G1404691
TU1604208 lncRNA downstream 79304 68951658 ~ 68951889 (-) True G1404687
TU1604198 lncRNA downstream 80152 68950635 ~ 68951041 (-) True G1404682
TU1604481 lncRNA upstream 1974 69035130 ~ 69036007 (-) True G1404898
TU1604506 lncRNA upstream 37871 69071027 ~ 69074520 (-) False G1404920
TU1604505 lncRNA upstream 40907 69074063 ~ 69076995 (-) True G1404920
TU1604517 lncRNA upstream 59485 69092641 ~ 69093770 (-) True G1404930
TU1604525 lncRNA upstream 74899 69108055 ~ 69108429 (-) True G1404937
XM_021567055.2 mRNA downstream 113767 68915576 ~ 68917426 (-) True LOC110492630
XM_021564517.2 mRNA downstream 135073 68894981 ~ 68896120 (-) True LOC110491168
XM_036945858.1 mRNA downstream 237865 68791313 ~ 68793328 (-) False LOC118939478
XM_036947619.1 mRNA downstream 258940 68703920 ~ 68772253 (-) False LOC110492626
XM_036947659.1 mRNA upstream 79860 69113016 ~ 69122652 (-) False LOC110492636
XM_036947658.1 mRNA upstream 79860 69113016 ~ 69123466 (-) True LOC110492636
XM_036945796.1 mRNA upstream 321346 69354502 ~ 69379181 (-) True LOC110492644
XM_036947667.1 mRNA upstream 437260 69470416 ~ 69506016 (-) True LOC110491170
XR_005036611.1 mRNA upstream 538697 69571853 ~ 69575843 (-) True LOC118939576
TU1604092 other downstream 236168 68791189 ~ 68795025 (-) True LOC118939478
TU1602806 other downstream 1587014 67443421 ~ 67444179 (-) True G1403498
TU1601943 other downstream 2536526 66484901 ~ 66494667 (-) False G1402707
TU1601912 other downstream 2604871 66425551 ~ 66426322 (-) False G1402686
TU1604570 other upstream 170130 69203286 ~ 69207158 (-) True G1404974
TU1604630 other upstream 244671 69277827 ~ 69280359 (-) True G1405016
TU1604821 other upstream 484599 69517755 ~ 69518113 (-) True G1405172
TU1605761 other upstream 1045501 70078657 ~ 70095541 (-) True G1405917
TU1605893 other upstream 1186721 70219877 ~ 70221256 (-) True LOC110492660

Expression Profile