RNA id: TU1604630



Basic Information


Item Value
RNA id TU1604630
length 822
RNA type TUCP
GC content 0.53
exon number 6
gene id G1405016
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 69277827 ~ 69280359 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CACGTAGCCTCCAGCTGTCCAGTGCCATAAATCCATTTAGAACGTTTTAAATGGTTTGAGAAAAATGGTGATGTGTGACATGAGCTGTCGTCATATAAATAGTATGACAAGGACACGGTACAAACAGTGTACTCACCCCCTGCGGATGGACTCCAGGAAGATGGCGTTTCCAGGGTCGCTGTAGTTTCTGAGTTCACCGTCGTCCAGGCTGAAACCTGTCTTCCACAGCTTCAGGACTATATGCACaTCCTGCTGGCTGTTAGCTGCTCTTCTCTCCCCAGCCACGTAAACAGGCTCCTCCTCAGGCGCGGCACCAAGCCGGTAGCCACCACCAATAAAGGGCCTGGCTCGACTAGGCTCTCCTGGGCCCCTCCCAGCCTTCTCCACGGGTACAGCCCCATGCTCCTTAGCCCCCTTGAAGAGGTCCTCCACCACCTCATTAGAGCTCTTCTTTTTGGGGGGTCCCACTATCTGCTGCCCACTGCGTTCAGAGCCCCCAGCAAAGAACCTTTGCCCTTCCTCCTCATCACTGTCATCTACTTCCTCATGCATCATATCTCTGAAGGAGGTTACCCTATTTTCACTCCTTGGCCCCGTAGGACGAGGCACAGAGGATCCACCACTCTCTGGCTGAGGAAGTGTCACGATGTCATCCTCAGGACCATCTTCAAAGAAACTGGCCAGGGCAACTGCAAATCCCAGCCGGCAGACTCCAAGAAAAAACGGGCCCTCTCCTCATCAACATCTGTAACAGCAACGAACTCCCTCACCGAGACTTCTTGGTCCGCCATTTTGATATGCCCATTCAATGAAAGCACCGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1604624 lncRNA downstream 5352 69272267 ~ 69272475 (-) True G1405010
TU1604614 lncRNA downstream 13723 69263114 ~ 69264104 (-) True G1405006
TU1604547 lncRNA downstream 33561 69174697 ~ 69244266 (-) True G1404952
TU1604579 lncRNA downstream 58730 69217833 ~ 69219097 (-) True G1404981
TU1604557 lncRNA downstream 91814 69185743 ~ 69186013 (-) True G1404962
TU1604631 lncRNA upstream 4616 69284975 ~ 69285607 (-) True G1405017
TU1604592 lncRNA upstream 25368 69305727 ~ 69312263 (-) False G1404991
TU1604593 lncRNA upstream 25368 69305727 ~ 69312263 (-) False G1404991
TU1604594 lncRNA upstream 25368 69305727 ~ 69306181 (-) False G1404991
TU1604591 lncRNA upstream 29013 69309372 ~ 69312263 (-) True G1404991
XM_036947658.1 mRNA downstream 154361 69113016 ~ 69123466 (-) True LOC110492636
XM_036947659.1 mRNA downstream 155175 69113016 ~ 69122652 (-) False LOC110492636
XM_021567055.2 mRNA downstream 360401 68915576 ~ 68917426 (-) True LOC110492630
XM_021564517.2 mRNA downstream 381707 68894981 ~ 68896120 (-) True LOC110491168
XM_036945858.1 mRNA downstream 484499 68791313 ~ 68793328 (-) False LOC118939478
XM_036945796.1 mRNA upstream 74143 69354502 ~ 69379181 (-) True LOC110492644
XM_036947667.1 mRNA upstream 190057 69470416 ~ 69506016 (-) True LOC110491170
XR_005036611.1 mRNA upstream 291494 69571853 ~ 69575843 (-) True LOC118939576
XM_036947670.1 mRNA upstream 297315 69577674 ~ 69641848 (-) False LOC110491172
XM_036947672.1 mRNA upstream 297315 69577674 ~ 69666016 (-) False LOC110491172
TU1604570 other downstream 70669 69203286 ~ 69207158 (-) True G1404974
TU1604092 other downstream 482802 68791189 ~ 68795025 (-) True LOC118939478
TU1602806 other downstream 1833648 67443421 ~ 67444179 (-) True G1403498
TU1601943 other downstream 2783160 66484901 ~ 66494667 (-) False G1402707
TU1601912 other downstream 2851505 66425551 ~ 66426322 (-) False G1402686
TU1604821 other upstream 237396 69517755 ~ 69518113 (-) True G1405172
TU1605761 other upstream 798298 70078657 ~ 70095541 (-) True G1405917
TU1605893 other upstream 939518 70219877 ~ 70221256 (-) True LOC110492660
TU1606185 other upstream 1455288 70735647 ~ 70742179 (-) True G1406228
TU1606514 other upstream 1979963 71260322 ~ 71260817 (-) True G1406514

Expression Profile