RNA id: TU1604592


Basic Information

Item Value
RNA id TU1604592
length 2077
lncRNA type antisense_over
GC content 0.39
exon number 4
gene id G1404991
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 69305727 ~ 69312263 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCCAACCTCATTAATGCCAGATATCCCGGTAATTGAAGAAAAAAATGGACTTTCCACAAAGCAGGTAGAGAGCACTTTATTGCAACTGCAAAACATTTATTGGTTGTGCCTGCGTATGTAACTCAGCACACAAATACACAGTACATAGGACTGCATTTGTGCCATGCGCCTAGACAGCTGTAACATCAAGAGCAATGATGGCCAGCATCTGAACATGTTCTCTATGCATTAGATTTAACTCTATTTCAACATACTTTTAAATGTGATACAAAACATGGATGTCTCCGTCACCTGACTACCACAACACAGCATTTTTATTTAGGCAGTGTGGTGTCAGTCTAATGACGCtgacaaaaaaatatttaccaTTCAATTACAGGTAAAAGTAGAAGTCATTCTTAGTTACCaagtcaaattgtattggtcgcatacacacaTTTTAGAAAGATGGCATCTGAAAAATATATAATGTCAAGTTGTGAGACAAAATAAGGTGGGGGGGGGTCACAATTGAATCGATTCCTCAACCCCCTTTTCAAAATCATCACTACTCCAATTAATGTGCGTATACGATATGGTTCCCATCACTGTTAATAACACATGTATGGCTTTCAACAGGGTTAAAGATTTGACTTGGAAAGAAAcataagcaacaacaacaacaaaaaatatgaaaatgcAAAACGTTGACACCTATAGATCAGGATATCATTATGTAGGACATGCAGAACCAGCTAGTTGGTTGCTCGTATGTCTCGTAATGAGAGACACGCAATATGATACAACAATTCCCTTCTGTACTGGTTTCTCTGTGCAGAATGCTCACTAGCGCCTAATAAAGTTAATCAAAATGAAAGGAAACATCACTATTTAGTCTGGGTAAATAACATATGTTCCTGTTGTATACCATTAAGACATCCCATGACTCAATATTTTAATACACTTATGCCTCTCAACATTACACTAGGCCCTACaactctaaaaaaaaaaatctattcatATTTGTTCTACTTTCAGCTGGGTGAGGTATGGATGCAAACATGTACTTTTCATATTCTCTTAGTTTTGTTCCTCGGGTAGGCTTCACGTCAAGCACCAGCCCTCTATGTTGCTGATAGGTTCTCTTGAAAAGAGATGAATGTCGCTGCTAATATTTCATTggtattttgcattactcatataACCATGCACAACCAATCATTTCACAAAACAAAGTAAAGCACAATTAAAAAATTAAAGATTTAAAAACATCAAGGTTTGTAAGGTTTTAAGGTTATGGCCCATAGgtttttaaagaaaaacaaaaTAACCAAGGCATTGATAACGAAGATTTTGTATATATGGATAAAATAATGACCAAAGTGGTGGAATTATAGACTCAGGTCTCTTATAGAATCAAGTGCAGACTTTCTTAGCCTTTCTACATGTTTCCTAGGTAGAAAGCAGCaaaaaaattaaaaaaaacttcATTCAAGGCTCAGTAGCTCAACATCAAAGATGAGGGTGGCGTTGGGTGGAATGATCCCCGGGTGGCCCTTTGCTCCGTAGGCAAAGTCAGGCGAGCAGGTCAGCTTGGCTCTCTGACCGACACTCATCTGCACGACTCCCTCTTCCCAGCCACGGATCACTTCCTGTTTTCCTATTTTAAACCTGAAGGGCTTGTCCCTGTCACGGGAGGAGTCAAACTTGCGTCCATCCGTCAGAGAGCCAACATAATGCACCACGCACGTCTGTCCTTTTTTAGGGAAGGTCCTTCCTGTGGGAGAAAAAGCCATAGAAAAACAGGATAACTGGCATGAAAAGACGACGAGACGCTAAAACAGGATAACGGGCATGAAAAGACGACGCGACGCTAAAACAGGATAACGGGCATGAGAAGACTAAGAGAAGCTGCCTTTTTTTGTGTGGAAATTAAAATGAATTAACGGAAATCCATCAGAAATCTTGAGCTAAAGATATGCATAAAAATATTTTACCATCGCCCGGGGTTATTGTCTCAATTTCTACTCCCATTTCCTTCGTTAATATCCCTCCACCCTACCAAGAGACTATCTTCCTTCAATCTGCTATTTCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1604631 lncRNA downstream 20120 69284975 ~ 69285607 (-) True G1405017
TU1604624 lncRNA downstream 33252 69272267 ~ 69272475 (-) True G1405010
TU1604614 lncRNA downstream 41623 69263114 ~ 69264104 (-) True G1405006
TU1604547 lncRNA downstream 61461 69174697 ~ 69244266 (-) True G1404952
TU1604599 lncRNA upstream 39454 69351717 ~ 69353915 (-) True G1404993
TU1604683 lncRNA upstream 103713 69415976 ~ 69416177 (-) True G1405067
TU1604692 lncRNA upstream 110975 69423238 ~ 69423487 (-) True G1405076
TU1604724 lncRNA upstream 136999 69449262 ~ 69449564 (-) True G1405104
TU1604727 lncRNA upstream 142923 69455186 ~ 69455456 (-) True G1405107
XM_036947658.1 mRNA downstream 182261 69113016 ~ 69123466 (-) True LOC110492636
XM_036947659.1 mRNA downstream 183075 69113016 ~ 69122652 (-) False LOC110492636
XM_021567055.2 mRNA downstream 388301 68915576 ~ 68917426 (-) True LOC110492630
XM_021564517.2 mRNA downstream 409607 68894981 ~ 68896120 (-) True LOC110491168
XM_036945858.1 mRNA downstream 512399 68791313 ~ 68793328 (-) False LOC118939478
XM_036945796.1 mRNA upstream 42239 69354502 ~ 69379181 (-) True LOC110492644
XM_036947667.1 mRNA upstream 158153 69470416 ~ 69506016 (-) True LOC110491170
XR_005036611.1 mRNA upstream 259590 69571853 ~ 69575843 (-) True LOC118939576
XM_036947670.1 mRNA upstream 265411 69577674 ~ 69641848 (-) False LOC110491172
XM_036947672.1 mRNA upstream 265411 69577674 ~ 69666016 (-) False LOC110491172
TU1604630 other downstream 25368 69277827 ~ 69280359 (-) True G1405016
TU1604570 other downstream 98569 69203286 ~ 69207158 (-) True G1404974
TU1604092 other downstream 510702 68791189 ~ 68795025 (-) True LOC118939478
TU1602806 other downstream 1861548 67443421 ~ 67444179 (-) True G1403498
TU1601943 other downstream 2811060 66484901 ~ 66494667 (-) False G1402707
TU1604821 other upstream 205492 69517755 ~ 69518113 (-) True G1405172
TU1605761 other upstream 766394 70078657 ~ 70095541 (-) True G1405917
TU1605893 other upstream 907614 70219877 ~ 70221256 (-) True LOC110492660
TU1606185 other upstream 1423384 70735647 ~ 70742179 (-) True G1406228
TU1606514 other upstream 1948059 71260322 ~ 71260817 (-) True G1406514

Expression Profile