RNA id: TU1604364


Basic Information

Item Value
RNA id TU1604364
length 2428
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G1404807
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 69351568 ~ 69354055 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCGTATCAACGGTGGACTAATGAAAACAAATAACAAAATATACATTTATGAGGCGATTTTTTTCCCCTTTAAAACACCAGTGAATTGCACAAGAAATGTAGAAAATAATCGCGTTCCCGCCTGACTACATTGCAGATGtatgccagatcttacaatgtCTGGATaggtctataggtctataacataatatcagctaaccacatcatatgatgTAGCAATCTGATAGGTCTATACGTCTATAACAtaatatcagctaaccacatcatatgatgTAGCAATCTGATGCCAAGACTGCACAGTGTGATGACGTGGCACGCAACGCCTGCGCATCTAGATGGGCAGGAACTCGCGATCGATCAATAACTCCCAGCCTGAGTGAGGTTGGCCCTGCACGTCACGTTCTGTCGGGGAGACCGAGTCAGTCTATAAAACGCATATCGTTATGATTATCACTCACACTATACTTTCATGATTGGGATTCTGCTAGAGATATTCTCAAACACTTATGGCTTTTAATGAAACATTTAGAGGCCTTACCAAGCAGGCCTCACAaatgacgggggggggggggggggcattcataggtaatgatgatgatgatacatgAAGGGGGAGAAATTATAGCAGCACAGAATATCGAGTCATATTCCAAATCCCAACAGGGCTGTGGAAGTTGTTCATACCTGCTGTGAAAGCACACGACGACAGTGAAACGTGTGTAAAGAGGCCTTCAAGCAGTTCATCCATTCATCAGCCAATCTATTTTTGTCATTGCTGCTTGTGATTTTACTACTCATAAGTGCCGGAAGTCATAGCGAAGAGGTTAAATAAGCAAAACCACGCAGAGGAGGGATTGTCAAGCAGAAGAAAATGAACAGGAATTACAGAGCAACAACATAAACGCACATCCAGCACACCTTACAGAAAGCAGTAAAACACTATTGTGTACAAGAAAGAAAGTCATGGAAGGCAAATGTTTTTCAGCATTCAGAGGTAAATGGCCTGTAATGGTCAGGATCTTCAGCTATGCTACAATCTAAATTCAAATTCACTGTTTCTTGGTTACAGTTGATTATTTCACTTTAGCTTTGGAAACGTATCCCATAATACAGGTATTGAATAGTTATGGAATATCAAAATGATattgcacaacaacaacaacaacaacaacaacaaaaaactctgATGAAAAACTGCAGACATAAggtgtggcgcagtggtctaaggctagagattctgggttcgcgaCCCGGGAGACCCACGGGGCGGCTTACAATTGGTCTGGGTTTaggtgagggtttggccggcagggatgtccttgtcccatcgcgcactagcgactcttgTGGTGGGTCGGGTGCAGCGCACGCTGACACGTTGGGTTAagtccgggttaagtgggcattgtgtcaagaagcagtgcggctcggctgggttgtgtttccgaggacacacggctctcaaccttcgcctcttcTGAGTcggtacgggagttgcagcgatgagacaagactgtaactgccAATTTGGATACCATGGAAACCGTAGACGTATTAGACTTTGGAAACACAAACTTGACTTCAAGCAAAATGGGGGAAAGGGAATTGCTTAACTTCATAAAGTGAATAATAGTGCAGAACAAAATGGATGACTAAAGAAACGACCAgatctgtttcctgtttcctgtttcctctcTGAACTACTCAATATACTTCACAAgatctgtttcctgtttcctctcTGAACTACTCAATATACTTCACAAgatctgtttcctgtttcctctcTGAACTACTCAATATACTTCACAAGATCTGTTCCTGTTTCCTCTCTGAACTACTCAATATACTTCACAAGATCTGTTCCTGTTTCCTCTCTGAACTACTCAATATACTTCACAAgatctgtttcctgtttcctctcTGAACTACTCAATATACTTCACAAGATCTGTTGCCTGTTTCCTCTCTGAACTACTCAATATACTTCACAAgatctgtttcctgtttcctctcTGAACTACTCAATATACTTCACAAgatctgtttcctgtttcctctcTGAACTACTCAATATACTTCACAAgatctgtttcctgtttcctctcTGAACTACTCAATATACTTCACAAgatctgtttcctgtttcctctcTGAACTACTCAATATACTTCACAAgatctgtttcctgtttcctctcTGAACTACTCAATATACTTCAACTCAATGGACTGTTCTTGCTGGTTGCATCACAATCTTATAGGACATCAGTTAGCTCATTAGTCCCTAACAAAGACTAATACTAAAACATTACAGTATAGCGTCTGCTTGCTCAGCCTTTCAATTATTTGACATCTCAACGACTTTACATTCATTACAGCCCAAAATAACAAGACACTAAAATCCTGCCAACTCAATCATAATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1604367 lncRNA upstream 38341 69313013 ~ 69313227 (+) True G1404810
TU1604355 lncRNA upstream 65870 69285284 ~ 69285698 (+) True G1404799
TU1604351 lncRNA upstream 77282 69273622 ~ 69274286 (+) True LOC110492915
TU1604349 lncRNA upstream 79683 69271639 ~ 69271885 (+) True G1404793
TU1604309 lncRNA upstream 176336 69174612 ~ 69175232 (+) True G1404756
TU1604392 lncRNA downstream 24217 69378272 ~ 69378569 (+) True G1404832
TU1604400 lncRNA downstream 37403 69391458 ~ 69412846 (+) True G1404839
TU1604699 lncRNA downstream 76270 69430325 ~ 69431433 (+) True G1405082
TU1604742 lncRNA downstream 114994 69469049 ~ 69470157 (+) True G1405118
TU1604818 lncRNA downstream 162033 69516088 ~ 69516360 (+) True G1405169
XM_036947666.1 mRNA upstream 4013 69313323 ~ 69347555 (+) True LOC110492642
XM_021567074.2 mRNA upstream 39364 69305670 ~ 69312204 (+) False fkbp1ab
XM_021567073.2 mRNA upstream 46176 69289013 ~ 69305392 (+) False LOC110492640
XM_036947664.1 mRNA upstream 46176 69289013 ~ 69305392 (+) False LOC110492640
XM_036947665.1 mRNA upstream 46176 69289013 ~ 69305392 (+) True LOC110492640
LOC118939480 mRNA downstream 74005 69428060 ~ 69428841 (+) True LOC118939480
XM_036947673.1 mRNA downstream 338967 69693022 ~ 69696403 (+) False LOC110492656
XM_036947674.1 mRNA downstream 338967 69693022 ~ 69696403 (+) True LOC110492656
XM_036947679.1 mRNA downstream 632122 69986177 ~ 69996398 (+) False LOC110492659
XM_036947675.1 mRNA downstream 632125 69986180 ~ 69996398 (+) False LOC110492659
TU1604359 other upstream 39305 69305696 ~ 69312263 (+) False fkbp1ab
TU1604360 other upstream 39305 69305696 ~ 69312263 (+) True fkbp1ab
TU1604341 other upstream 97859 69245545 ~ 69253709 (+) True G1404785
TU1604245 other upstream 238218 69109714 ~ 69113350 (+) False G1404700
TU1603714 other upstream 669591 68681446 ~ 68681977 (+) True G1404281
TU1604386 other downstream 10466 69364521 ~ 69369376 (+) True G1404827
TU1604866 other downstream 226674 69580729 ~ 69583626 (+) False G1405216
TU1604867 other downstream 227312 69581367 ~ 69583626 (+) False G1405216
TU1604868 other downstream 228478 69582533 ~ 69583626 (+) True G1405216
TU1604870 other downstream 231934 69585989 ~ 69586906 (+) True G1405218

Expression Profile