RNA id: TU1604866



Basic Information


Item Value
RNA id TU1604866
length 2334
RNA type TUCP
GC content 0.41
exon number 5
gene id G1405216
representative False

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 69580729 ~ 69583626 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGTCTGTACAGTATGATGGGTTTCCATACAGTACGTGTGAAATATCTATTGTTCCAATAAGTATGGTAATGTTTGAAATACTGTGTTTGATTCTCAGAACGTGTGTGTATTTGATCATGTCGGTGTATTTAATGTTCAGtaatgtgtccctgtgtgtatttGATCATCCAGGTGTAATGTTCATtaatgtgtccctgtgtgtatttGATCATCCAGGTGTAATGTTCATtaatgtgtccctgtgtgtatttGATCATCCAGGTGTAATGTTCAGTAACGTGTCCCTGTGGGTATTTGCCAAGAGTCATAAATGTAATGTCTGCAAACAGACCCGACAAGAGAGCCATGACTCAACAGTATCCATGGAAACTGATCCTTTGTCCCACAATCCTATCTCCCACATAGTTTGTCTTTTACTTCAGTCTCTTCTCGCGTGACCTTGCTTAGTTCTTTAGTACCGCTTGATGAAGAACGCGGTGGCTAttaaaatgcatcaaTGTGTTTGGTCCAATGGTCTCTGTGTCAATGTTTCTGTGATTtgagtgagtgagggaaaaaTCCTTGTTTCAGTCACATGAATTCAATCCCCTGGAATTGAAAAAGCTTCAATATTTGAGGGTCTGAGTGAAGTGTCAGAAGGTTAATGGAGATAGTTATAGTATATTCGTTGTTTCTGCTGGGAGAGTAAGaggatgagagtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtctgtctgtctgtgtgtttgaggaagagagagatacagggagtgAGAGAAGACATGTCATTTGCTTggttatgtgtgtgtacatgtgataCATGCAAGTGATTTTGAAATCAAATGATAGCGTTGTTCacctgttgtttaaaaaaaaaaaacatcttaagaaacatttcaataaaAGTCATATACATTTCTATTCCATTTACAAAAGTACCAAAACAAAACCCATAAGACTAGATTTACAGAAGGGCTAGTGAGTGAAGAGACACAACAGTAAGACTAGGAAGGTTTAAGGTTACACACACTATCACGTGGCGGTAAAGTCCATGGTGGGATCAGGTGGGAGAACGAAGGAGAGAAGATGGAGGCATTTGGGTCCATCAAAAAtgaatacatttaaaacataaaAAACATGAGGAATGTAAAATTGCCAACACAAGTTCTAAAGAGTCATGTGATCGTAACGTAAACAATAAAGACAAAAAAATATACTGTAAAGTGTTCTAGAACAGGGCAATTTGATGGGGGATTGTTTGGTCAGGGAAAACTAATTCTGAATCATCAGCTATATCCTCTACCTCGGTgctgtccaaccctcttcctggagatctactgtccagtaggttcagtccaaccctcttcctggagatctactgtccagtaggttttcagtccaaccaaGTGGTAGAGGTTAATGGTTCACTGTCTCAGGCAAAACCAATGAGTTGTGGCATTCCACTGGGGAGCGTGCTTGGGCCTCTGCtgtttttattgtatattaaCGATATGAAAGATGCTTGTTCTTGCCGTCTTTTTCTTCATGTGGATGACTCTACACTTCTGGTGTCTCACAAAAGTAAAACTATGTTGGAGAGCATACTTAGCACAGAGCTTACTAGCATTAGCAAATGGCTTGGAGATAATAAGCTATCTCTGCACTTAGGGAAAACTGAAGTAATTATTTTTGGATCCAGACCTAAATTGAGTAGGTTCTCTAAAATCAGTGTGGAATTAAGGGGTCCGGTGTTGACTACTAAAATCTCTGTTAGCTACTTGGGATGTATCCTTGATGGAAGCTTGGGAGGTGTGAGCATGGCCAATAAGGTGCTATAGGGAAGGTTAATGCCAGGACTATGTCTTTGGCTAGAATGTCCAAGCTGCTTGATAAGGACTCCATGAAAGTGCTAGCTACTGCCctcattcaatgccattttgattatgctagtacttcctggtttgggGGCTTATCTAAACTTATGAAGGGGAAGCTCCAGATAGCCCAGAATAAGCTGATCAGGGTAGTATTGAAGGTGAGTCCACGTATTCACATAGGCAGCAGCTGCTTTCAGGAACTAAACTAATctttcctggagatctactgtcctgtaggttttcagtcctaccctcttcctggagatctactgtcctgtaggttttcagtcttACACTCTTcttggagatctactgtcctgtaggttttcagtctaaccctcttcctggagatctactgtcctgtaggttttcagtcctaCCCTAATGtagcatatctgattcagctagttaagatcttgttgagcagctaatatgtagaatcaggtgtgtt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1604864 lncRNA upstream 7626 69572402 ~ 69573103 (+) True G1405214
TU1604853 lncRNA upstream 38341 69542174 ~ 69542388 (+) True G1405203
TU1604848 lncRNA upstream 41418 69538809 ~ 69539311 (+) True G1405198
TU1604837 lncRNA upstream 49393 69531125 ~ 69531336 (+) True G1405188
TU1604820 lncRNA upstream 62767 69517597 ~ 69517962 (+) True G1405171
TU1604887 lncRNA downstream 42302 69625928 ~ 69641957 (+) True G1405233
TU1604897 lncRNA downstream 54884 69638510 ~ 69639633 (+) True G1405240
TU1604903 lncRNA downstream 66121 69649747 ~ 69652316 (+) True G1405245
TU1604992 lncRNA downstream 115231 69698857 ~ 69699511 (+) True G1405325
TU1604999 lncRNA downstream 120556 69704182 ~ 69704394 (+) True G1405331
LOC118939480 mRNA upstream 151888 69428060 ~ 69428841 (+) True LOC118939480
XM_036947666.1 mRNA upstream 233174 69313323 ~ 69347555 (+) True LOC110492642
XM_021567074.2 mRNA upstream 268525 69305670 ~ 69312204 (+) False fkbp1ab
XM_021567073.2 mRNA upstream 275337 69289013 ~ 69305392 (+) False LOC110492640
XM_036947673.1 mRNA downstream 109396 69693022 ~ 69696403 (+) False LOC110492656
XM_036947674.1 mRNA downstream 109396 69693022 ~ 69696403 (+) True LOC110492656
XM_036947679.1 mRNA downstream 402551 69986177 ~ 69996398 (+) False LOC110492659
XM_036947675.1 mRNA downstream 402554 69986180 ~ 69996398 (+) False LOC110492659
XM_036947676.1 mRNA downstream 403473 69987099 ~ 69996398 (+) False LOC110492659
TU1604386 other upstream 211353 69364521 ~ 69369376 (+) True G1404827
TU1604359 other upstream 268466 69305696 ~ 69312263 (+) False fkbp1ab
TU1604360 other upstream 268466 69305696 ~ 69312263 (+) True fkbp1ab
TU1604341 other upstream 327020 69245545 ~ 69253709 (+) True G1404785
TU1604245 other upstream 467379 69109714 ~ 69113350 (+) False G1404700
TU1604870 other downstream 2363 69585989 ~ 69586906 (+) True G1405218
TU1604973 other downstream 87838 69671464 ~ 69672674 (+) True G1405310
TU1605337 other downstream 546295 70129921 ~ 70132301 (+) True G1405605
TU1605451 other downstream 673196 70256822 ~ 70257430 (+) True G1405676
TU1606344 other downstream 1385989 70969615 ~ 70972604 (+) True G1406381

Expression Profile