RNA id: TU1604887


Basic Information

Item Value
RNA id TU1604887
length 1349
lncRNA type antisense_over
GC content 0.56
exon number 2
gene id G1405233
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 69625928 ~ 69641957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTAGAGGGGCGTGGCTCCCACCCCATGCAGGAACTGGCCCAGCATGAAGACAAAGCGGTAGCTGGACAGGCCCCCACCCTCGTTATCATGGCAACGTCTGGTACGGTTCCCCGTACACACCCCTGTCTGCTCGGGCATGCTTACCTGGTACGGGGAAGTGGTGAAGTGAGGCAGGGCGAACACCAGAGATCCTAGCGCCATGACCAGCaccccccagcccagccagcgAGGCTTGTGCCCCGTCCCACCAAAGTAACTGACAAAGGCCAGGCACACACAGGCAGCGATGTCGTAGGAGCTGGCGATGAGACCGGTCTGGTAGCTGCGCAGGTCAAAACGTCTCTCTATGGAGGTCACCACGGTGTTGATGAAGCCGTTGATGATCATGCCCTGGAGGAAGGAGGCCACACACAGGAAGAACAGTACCCAGCGAGGGGTGTTGAAGGTCTGGATGACTCGGGGCGTCAGAGCCCCCCAGCCACACAGGCCTTCTGAGTGTGTGGGGATGAATGTGAGGCCCAGTGGGGTCTCCGCGGGTGCTTGGCCCGTGTAAAGCTGTCCAGGCAGTGGGGTAGCAGCCCGGGTGAGGATGATGTGGCGAGCGGGGCTATTTCCAGTGGCGCTGCCAGGGCCTGAACCCACTGGGCTGTCCTCCTGAGAGTCTACAGGGCTGGGTGTCTCTAGGGAGGGGCACATAGGGCCGTCCTGGAGGTCCAGCAGCTCCTGCTTGGAGCTGAAGGAGACGTCGGCAGTGAGTAGGATAGGCATGACCCCAGGGAGGGGCTCTCTGAGAGGGATAAAAGGCCTGGGAGAGCGAGTGCGTTGTAAGAAAGGGTTGACTTTCTCCTGTGGGCTAGTGTCTGTACTCTATCTCACCCAGGGTATGGATATGCCACTGAGCAGTGAAAGTGTCTGGAAGTAGAAAGCAATCCTCTGCCAgaggggaccactacacagggAAATGGACAGGATGTGCTTTACTGCGACCTCTGGGAAACGTCCTCCTTCTCCTCTAGATTATTTTCCtccttttcctttcctttcctctttgTGTTTTTATGTTCTCCACACAGCAGACGAGATTAGGTTTCAGGTGAGTCGTTGGGTGCATCCACATTCAGGTAAAATACATTCCCTTAGTGGGGAAATCCTCAAAGTAGCGCGACCAAAATGCTCCCCAAACAGCATCTGTAGTTTCAGAAGCCGTAGGATTGAAACATTCAGTATTTTTCGATGACACCTTTCTATCCTTTTGAAAAAAAGTTGACCTTTGAACTTCCTGGTACTTCCTCAGAAATGCAGATGAGTCAGACAGGTGTGGCTGGGCTGTGTCAGGAGGCTCCAGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1604864 lncRNA upstream 52825 69572402 ~ 69573103 (+) True G1405214
TU1604853 lncRNA upstream 83540 69542174 ~ 69542388 (+) True G1405203
TU1604848 lncRNA upstream 86617 69538809 ~ 69539311 (+) True G1405198
TU1604837 lncRNA upstream 94592 69531125 ~ 69531336 (+) True G1405188
TU1604820 lncRNA upstream 107966 69517597 ~ 69517962 (+) True G1405171
TU1604903 lncRNA downstream 7790 69649747 ~ 69652316 (+) True G1405245
TU1604992 lncRNA downstream 56900 69698857 ~ 69699511 (+) True G1405325
TU1604999 lncRNA downstream 62225 69704182 ~ 69704394 (+) True G1405331
TU1605014 lncRNA downstream 96939 69738896 ~ 69768630 (+) True G1405344
TU1605020 lncRNA downstream 105770 69747727 ~ 69748528 (+) True G1405349
LOC118939480 mRNA upstream 197087 69428060 ~ 69428841 (+) True LOC118939480
XM_036947666.1 mRNA upstream 278373 69313323 ~ 69347555 (+) True LOC110492642
XM_021567074.2 mRNA upstream 313724 69305670 ~ 69312204 (+) False fkbp1ab
XM_036947664.1 mRNA upstream 320536 69289013 ~ 69305392 (+) False LOC110492640
XM_036947673.1 mRNA downstream 51065 69693022 ~ 69696403 (+) False LOC110492656
XM_036947674.1 mRNA downstream 51065 69693022 ~ 69696403 (+) True LOC110492656
XM_036947679.1 mRNA downstream 344220 69986177 ~ 69996398 (+) False LOC110492659
XM_036947675.1 mRNA downstream 344223 69986180 ~ 69996398 (+) False LOC110492659
XM_036947676.1 mRNA downstream 345142 69987099 ~ 69996398 (+) False LOC110492659
TU1604870 other upstream 39022 69585989 ~ 69586906 (+) True G1405218
TU1604866 other upstream 42302 69580729 ~ 69583626 (+) False G1405216
TU1604867 other upstream 42302 69581367 ~ 69583626 (+) False G1405216
TU1604868 other upstream 42302 69582533 ~ 69583626 (+) True G1405216
TU1604386 other upstream 256552 69364521 ~ 69369376 (+) True G1404827
TU1604973 other downstream 29507 69671464 ~ 69672674 (+) True G1405310
TU1605337 other downstream 487964 70129921 ~ 70132301 (+) True G1405605
TU1605451 other downstream 614865 70256822 ~ 70257430 (+) True G1405676
TU1606344 other downstream 1327658 70969615 ~ 70972604 (+) True G1406381
TU1606401 other downstream 1560485 71202442 ~ 71206092 (+) True G1406424

Expression Profile