RNA id: TU1605014


Basic Information

Item Value
RNA id TU1605014
length 427
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G1405344
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 69738896 ~ 69768630 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtataaataaagcttgatttgattcgatttgatggATGCAGACTATCTTGAGAACGCAATGAATGAATCACATGTCAATACTGCCAATGAACACACAGGATGCAGCACCTCAGGAATGATCTCCCATTGACCTCTACagagcttctctctccctctctccatctctctgtcaagctctctctctctccatctctatgtcaacctctctctctccctctctccctctctctccatctctctgtccacctctctctctctccatctctctgtcaacctctctctctctccctcgctctccatctctctgtcaacctctctctctctccctctctctccctctctctccatctctctgtccacctctctctctctccatctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1604999 lncRNA upstream 34502 69704182 ~ 69704394 (+) True G1405331
TU1604992 lncRNA upstream 39385 69698857 ~ 69699511 (+) True G1405325
TU1604903 lncRNA upstream 86580 69649747 ~ 69652316 (+) True G1405245
TU1604887 lncRNA upstream 96939 69625928 ~ 69641957 (+) True G1405233
TU1604897 lncRNA upstream 99263 69638510 ~ 69639633 (+) True G1405240
TU1605048 lncRNA downstream 26940 69795570 ~ 69796831 (+) True G1405366
TU1605039 lncRNA downstream 37012 69805642 ~ 69812399 (+) False G1405360
TU1605042 lncRNA downstream 37012 69805642 ~ 69808715 (+) True G1405360
TU1605186 lncRNA downstream 112609 69881239 ~ 69881523 (+) True G1405480
TU1605187 lncRNA downstream 114117 69882747 ~ 69882997 (+) True G1405481
XM_036947673.1 mRNA upstream 42493 69693022 ~ 69696403 (+) False LOC110492656
XM_036947674.1 mRNA upstream 42493 69693022 ~ 69696403 (+) True LOC110492656
LOC118939480 mRNA upstream 310055 69428060 ~ 69428841 (+) True LOC118939480
XM_036947666.1 mRNA upstream 391341 69313323 ~ 69347555 (+) True LOC110492642
XM_021567074.2 mRNA upstream 426692 69305670 ~ 69312204 (+) False fkbp1ab
XM_036947679.1 mRNA downstream 217547 69986177 ~ 69996398 (+) False LOC110492659
XM_036947675.1 mRNA downstream 217550 69986180 ~ 69996398 (+) False LOC110492659
XM_036947676.1 mRNA downstream 218469 69987099 ~ 69996398 (+) False LOC110492659
XM_036947677.1 mRNA downstream 218469 69987099 ~ 69996398 (+) True LOC110492659
XM_036947680.1 mRNA downstream 274618 70043248 ~ 70069326 (+) False LOC118939577
TU1604973 other upstream 66222 69671464 ~ 69672674 (+) True G1405310
TU1604870 other upstream 151990 69585989 ~ 69586906 (+) True G1405218
TU1604866 other upstream 155270 69580729 ~ 69583626 (+) False G1405216
TU1605337 other downstream 361291 70129921 ~ 70132301 (+) True G1405605
TU1605451 other downstream 488192 70256822 ~ 70257430 (+) True G1405676
TU1606344 other downstream 1200985 70969615 ~ 70972604 (+) True G1406381
TU1606401 other downstream 1433812 71202442 ~ 71206092 (+) True G1406424
TU1606505 other downstream 1441642 71210272 ~ 71210764 (+) True G1406505

Expression Profile