RNA id: TU1605778


Basic Information

Item Value
RNA id TU1605778
length 1914
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G1405920
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 70034724 ~ 70037391 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACTTCAGAGAAGAAGGCAGATTTACAAGACGCCTCAGAGGGCCTTTCAAATACTGCTGAGGAAATGTTTACGCAACATCATCTACGTCAGGCACAAGGGGATGGAAAAACATGCCTCTCAGTGCAGAACTGAACACTCTGGAGATTCATTGATAACTATAAATCTATCAGCAAGTTCTATTTCACTTCAAGGACTTTCATGGGCTTGTTAAAATCAGTCCTGGTCAGCCCGGACTGTCAGCTGCACTTTGAAAATATGAAACATACATCTCCACCGAGGCTTACACTGACACGGTTAGTCACTCTAATACACTGAGGCTGTTAGTCACTCTAATACACTGACACGGTTAGTCACTCTAATACACTGAGGCTGTTAGTCACTCTAATACACTGAGGCTGTTAGTCACTCTAATACACTGACACGGTTAGTCACTCTAATACACTGACACGGTTAGTCACTCTAATACACTGACACGGTTAGTCACTCTAATACACTGACACGGTTAGTCACTCTAATACACTGACACGGTTAGTCATTCTAATACACTGAGACTGTTAGTCACTCTAATACACTGACACGGTTAGTCACTCTAATACACTGACACGGCAAGTCACTCTAATACACTGACACGGTTAGTCACTCTAATACACTGACACAGTTAGTCACTCTAATACACTGACACGGTTAGTCACTCTAATACACTGACACGGTTAGTCACTCTAATACACTGACACGGTTAGTCACTCTAAAAAACTGACATGGTTAGTCACTCTAATACACTGAGGCTGTTAGTTACTCTAATACACTGACACGGTTAGTCACTCTAATACACTGACACGGTTAGTCACTCTAATACACTGACATGGTTAGTCACTCTTATACACTGACACGGTTAGTCACTCTAATACACTGAGGCTGTTAGTCACTCTAATACACTGACACGGTTATTCACTCTAATACACTGAGGCTGTTAGTTACTCTAATACACTGACACGGTTAGTCACTCTAATACACTGAAGCTGTTAGTCACTCTAATACACTGACACTGTTAGTCACTCTAATACACTGAGGCTGTTAGTCACTCTAATACAATGACGCTCTTAGTCACTCCAATACACTGACACGGTTAGTCATTCTAATACACTCTGGCTGTTAGTCACTCTAATACACTGAGGCTGTTAGTCACTCTAATACACTGAGGCTGTTAGTCACTCTAATACAATGACGCTCTTAGTCACTCCAATACACTGACACGGTTAGTCATTCTAATACACTCTGGCTGTTAGTCACTCTAATACACTGAGGCTGTTAGTCACTCTAATACACTGACATGGTTAGTCATTCTAATACACTGAGCCTGTTCGTCACTCTAATACACTGAAATGGTTAGTCACTCTAATACACTGACACTGTTAGTCACTCTAATACACTGACGCTGTTAGTCACTCTAATACACTGACGCTGTTAGTCACTCCAATACACTGACACGGTTAGTCATTCTAATACACTGAGGCTGTTAGTCACTCTAATACACTGACACGGTTAGTCACTCTAATACACTGACACCGTTAGTCATTCTAATACACTGAGGCTGTAAGTCACTCTAATACACTGAAACTGTTAGTCATTCTAATACACTGAGGCAGTTAGTCACTCTAATACACTGAGGCTGTTAGTCACTCTAAGATGACACTGTTAGTCACTCTAAGCTGTTAAATGTGATCAGCCAATATTGCAAAAAAGAGGTATGGACACCATACACCAGGTTTCCCCCCAGACTGTAGGTCTCCTGTAACCCAGTGGGTATTCTGACCTTTTCTGGGAAGTGGTAAATATATATGCATGGGATGTAAAGACCCCTTCGGTGTTAGTCGCTTTGGATGAAAGCACCTCTTAAAGGGTATGTGTACATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1605753 lncRNA downstream 8239 70024699 ~ 70026485 (-) True G1405912
TU1605736 lncRNA downstream 18568 70014596 ~ 70016156 (-) True G1405907
TU1605262 lncRNA downstream 56913 69976709 ~ 69977811 (-) True G1405555
TU1605257 lncRNA downstream 63965 69970516 ~ 69970759 (-) True G1405550
TU1605248 lncRNA downstream 76254 69957915 ~ 69958470 (-) True G1405541
TU1605821 lncRNA upstream 67461 70104852 ~ 70106962 (-) False G1405954
TU1605823 lncRNA upstream 67461 70104852 ~ 70106962 (-) False G1405954
TU1605828 lncRNA upstream 67461 70104852 ~ 70106962 (-) False G1405954
TU1605830 lncRNA upstream 67461 70104852 ~ 70106962 (-) False G1405954
TU1605831 lncRNA upstream 67461 70104852 ~ 70106962 (-) False G1405954
XM_036947669.1 mRNA downstream 368707 69577674 ~ 69666017 (-) False LOC110491172
XM_036947672.1 mRNA downstream 368708 69577674 ~ 69666016 (-) False LOC110491172
XM_036947671.1 mRNA downstream 368709 69595011 ~ 69666015 (-) False LOC110491172
XM_036947670.1 mRNA downstream 392876 69577674 ~ 69641848 (-) False LOC110491172
XR_005036611.1 mRNA downstream 458881 69571853 ~ 69575843 (-) True LOC118939576
XM_036947683.1 mRNA upstream 89862 70127253 ~ 70133280 (-) True LOC118936543
XR_005036612.1 mRNA upstream 147984 70185375 ~ 70187858 (-) True LOC118939578
XM_036947689.1 mRNA upstream 179147 70216538 ~ 70221289 (-) False LOC110492660
XM_036947690.1 mRNA upstream 179148 70216539 ~ 70221289 (-) False LOC110492660
XM_036947688.1 mRNA upstream 179148 70216539 ~ 70221552 (-) False LOC110492660
TU1604821 other downstream 516611 69517755 ~ 69518113 (-) True G1405172
TU1604630 other downstream 754365 69277827 ~ 69280359 (-) True G1405016
TU1604570 other downstream 827566 69203286 ~ 69207158 (-) True G1404974
TU1604092 other downstream 1239699 68791189 ~ 68795025 (-) True LOC118939478
TU1602806 other downstream 2590545 67443421 ~ 67444179 (-) True G1403498
TU1605761 other upstream 41266 70078657 ~ 70095541 (-) True G1405917
TU1605893 other upstream 182486 70219877 ~ 70221256 (-) True LOC110492660
TU1606185 other upstream 698256 70735647 ~ 70742179 (-) True G1406228
TU1606514 other upstream 1222931 71260322 ~ 71260817 (-) True G1406514
TU1606849 other upstream 1465088 71502479 ~ 71527677 (-) False G1406752

Expression Profile