RNA id: TU1605833


Basic Information

Item Value
RNA id TU1605833
length 910
lncRNA type antisense_over
GC content 0.48
exon number 7
gene id G1405954
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 70104852 ~ 70106962 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCCACAAACTTGTTCATGTACCAGCGCTGCTCAGGCACCTGGCGAGGGATCTGATTGGTGCGGACGGGGTTATCGTACGGCTGCTTGCGGAAGCCAAAGTAGTAGCCCAAGTAGACCAGCGGCATGGAGATACCGAACCACATGCAGAGTAGAGCCAGcatggtggtgaaggggacctgAAGAGGGAAGACGACGTCACAGGTTGAGATGGTCCACAACACCTGTCCTTGTTCTGAGGGCGGTAGACTGAATGTGTTGATGATATTCAGGGAACAGGTGTATTCCAGATCATTGTGGAGAATTGGAAAGCATGTGGATTTGACATATATTTTCTATGTCTTGTTTGAAAAACCAATGGCCCTCTCTGGGTCAAATAaagtggtcctatagacagtgAATGTGTTGCTATAcagtggtcctatagacagtggtcctatagacagtggtcctatagacagtggtcctatagacagtggtcctatagacagtgAATGTGTTGCTATAcagtggtcctatagacagtgGTCCTATAGACAGtgAATGTGTTGCTAGAcagtggtcctatagacagtggtcctatagacagtggtcctatagacagtggtcctatagacagtggtcctatagacagtggtcctatagacagtgAATGTGTTGatagacagtgGTCCTATAGACAGCGGTCCTATAGACAGCGGTCCTATAGACAGTGAATGTGTTGCTATACAGCGCTCCTATAGACAGCGCTCCTATAGACAGCGCTCCTATAGACAGtgaatgtgttgatatacagtgggcctgtatgTAGGAgactagctagctcacagctccAGAAGAGTGCTCTCCCCAGATGAAACAGTTGAGGACGAAGCAGATGGAGAAGACCACAGCCGGGTACAGAGTGGCCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1605778 lncRNA downstream 67461 70034724 ~ 70037391 (-) True G1405920
TU1605753 lncRNA downstream 78367 70024699 ~ 70026485 (-) True G1405912
TU1605736 lncRNA downstream 88696 70014596 ~ 70016156 (-) True G1405907
TU1605262 lncRNA downstream 127041 69976709 ~ 69977811 (-) True G1405555
TU1605257 lncRNA downstream 134093 69970516 ~ 69970759 (-) True G1405550
TU1605769 lncRNA upstream 5937 70112899 ~ 70113693 (-) False G1405918
TU1605773 lncRNA upstream 5937 70112899 ~ 70113881 (-) False G1405918
TU1605774 lncRNA upstream 5937 70112899 ~ 70113693 (-) False G1405918
TU1605775 lncRNA upstream 5937 70112899 ~ 70113881 (-) True G1405918
TU1605795 lncRNA upstream 19089 70126051 ~ 70126294 (-) True G1405933
XM_036947669.1 mRNA downstream 438835 69577674 ~ 69666017 (-) False LOC110491172
XM_036947672.1 mRNA downstream 438836 69577674 ~ 69666016 (-) False LOC110491172
XM_036947671.1 mRNA downstream 438837 69595011 ~ 69666015 (-) False LOC110491172
XM_036947670.1 mRNA downstream 463004 69577674 ~ 69641848 (-) False LOC110491172
XR_005036611.1 mRNA downstream 529009 69571853 ~ 69575843 (-) True LOC118939576
XM_036947683.1 mRNA upstream 20291 70127253 ~ 70133280 (-) True LOC118936543
XR_005036612.1 mRNA upstream 78413 70185375 ~ 70187858 (-) True LOC118939578
XM_036947689.1 mRNA upstream 109576 70216538 ~ 70221289 (-) False LOC110492660
XM_036947690.1 mRNA upstream 109577 70216539 ~ 70221289 (-) False LOC110492660
XM_036947688.1 mRNA upstream 109577 70216539 ~ 70221552 (-) False LOC110492660
TU1605761 other downstream 9311 70078657 ~ 70095541 (-) True G1405917
TU1604821 other downstream 586739 69517755 ~ 69518113 (-) True G1405172
TU1604630 other downstream 824493 69277827 ~ 69280359 (-) True G1405016
TU1604570 other downstream 897694 69203286 ~ 69207158 (-) True G1404974
TU1604092 other downstream 1309827 68791189 ~ 68795025 (-) True LOC118939478
TU1605893 other upstream 112915 70219877 ~ 70221256 (-) True LOC110492660
TU1606185 other upstream 628685 70735647 ~ 70742179 (-) True G1406228
TU1606514 other upstream 1153360 71260322 ~ 71260817 (-) True G1406514
TU1606849 other upstream 1395517 71502479 ~ 71527677 (-) False G1406752
TU1606887 other upstream 1422117 71529079 ~ 71545845 (-) False G1406752

Expression Profile