RNA id: TU1605769


Basic Information

Item Value
RNA id TU1605769
length 755
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G1405918
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 70112899 ~ 70113881 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCCAACGAATCAGCACTTTAATTGTTTCATACATTATATAACTGGACATTCTGTAAAGAAAACGTGGGGAAAAAAAGACAAATAAAAAGTTTCTTAAAAACCATGCACATGATCTTTATACATACAGTCAGAGCCCCAcaacaggagagaaaaaaaaaaaaaaacagcgcTTTGCATTTACATACATAGCAGActgtcattcacacacacacacacacacacacacacacacatacatacacagctCATGTCAATCAAAAGAACATCTGTAGAAATTCTCTCTCCTGAAATTTTGTTTGATGGGCCCAGGTGAGGAAGTCCGTCTGTGGATCAGGAACACTTTCAGACACTGGCAGAGGGGAGGAAAAGGCCGATGGGATAATGTAGAggtgaatgtgagagagagatggctgaTGGGATAATGTAGAggtgaatgtgagagagagagatggctgatGGGATAATGTAGTggtgaatgtgagagagagagatggctgatGGGATAATGTAGCGGGGAATGTGAGAGATGGCTGATGGGATAATGTAGAGGTGAATGTGAGAGAGGGATGGCTGATGGGATAATGTAGAGATGAAtgtgagagagatgcagagaaaagCTGTTAAGGGAGAGTGGagacaggaggcagagagaggtatgATTCATTCAGTGGTTCACTGTATTATCATTCACCCAGAATGGAGTAATTCCCTCTCAGCACCggttccctccctttccctctcagcACCggttccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1605821 lncRNA downstream 5937 70104852 ~ 70106962 (-) False G1405954
TU1605823 lncRNA downstream 5937 70104852 ~ 70106962 (-) False G1405954
TU1605828 lncRNA downstream 5937 70104852 ~ 70106962 (-) False G1405954
TU1605830 lncRNA downstream 5937 70104852 ~ 70106962 (-) False G1405954
TU1605831 lncRNA downstream 5937 70104852 ~ 70106962 (-) False G1405954
TU1605795 lncRNA upstream 12358 70126051 ~ 70126294 (-) True G1405933
TU1605777 lncRNA upstream 21077 70134770 ~ 70135100 (-) True G1405919
TU1605838 lncRNA upstream 23694 70137387 ~ 70137737 (-) True G1405958
TU1605888 lncRNA upstream 109469 70223162 ~ 70226004 (-) True G1405985
TU1606013 lncRNA upstream 275915 70389608 ~ 70394300 (-) True G1406075
XM_036947669.1 mRNA downstream 446882 69577674 ~ 69666017 (-) False LOC110491172
XM_036947672.1 mRNA downstream 446883 69577674 ~ 69666016 (-) False LOC110491172
XM_036947671.1 mRNA downstream 446884 69595011 ~ 69666015 (-) False LOC110491172
XM_036947670.1 mRNA downstream 471051 69577674 ~ 69641848 (-) False LOC110491172
XR_005036611.1 mRNA downstream 537056 69571853 ~ 69575843 (-) True LOC118939576
XM_036947683.1 mRNA upstream 13560 70127253 ~ 70133280 (-) True LOC118936543
XR_005036612.1 mRNA upstream 71682 70185375 ~ 70187858 (-) True LOC118939578
XM_036947689.1 mRNA upstream 102845 70216538 ~ 70221289 (-) False LOC110492660
XM_036947690.1 mRNA upstream 102846 70216539 ~ 70221289 (-) False LOC110492660
XM_036947688.1 mRNA upstream 102846 70216539 ~ 70221552 (-) False LOC110492660
TU1605761 other downstream 17358 70078657 ~ 70095541 (-) True G1405917
TU1604821 other downstream 594786 69517755 ~ 69518113 (-) True G1405172
TU1604630 other downstream 832540 69277827 ~ 69280359 (-) True G1405016
TU1604570 other downstream 905741 69203286 ~ 69207158 (-) True G1404974
TU1604092 other downstream 1317874 68791189 ~ 68795025 (-) True LOC118939478
TU1605893 other upstream 106184 70219877 ~ 70221256 (-) True LOC110492660
TU1606185 other upstream 621954 70735647 ~ 70742179 (-) True G1406228
TU1606514 other upstream 1146629 71260322 ~ 71260817 (-) True G1406514
TU1606849 other upstream 1388786 71502479 ~ 71527677 (-) False G1406752
TU1606887 other upstream 1415386 71529079 ~ 71545845 (-) False G1406752

Expression Profile