RNA id: TU1605451



Basic Information


Item Value
RNA id TU1605451
length 609
RNA type TUCP
GC content 0.60
exon number 1
gene id G1405676
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 70256822 ~ 70257430 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCATCAGCTGCATCtgtgttctcctcctcttcctgatctgtgttctccccctcctctgtctccttctcctgcctttcctcctgctcctcctcggTTTCTTCTTCGTGCTGTGGCTGTTCCTGGGTCAGCTCTtctgtcttctcctccttctcgtcctcctctttggcctcctcctctgcctcttcgcTGCTCCCATCACTGTCCATGCTGAAGCCCTCGTCCATGACCAGCTTTAGAGGGTGGGACTTTCTTTTAGAGGACGGCTGGTCCTGCTCTGCCTCAGCGTCTGCCAGACGTCGCTTCCTGGCCAAGGGGCAGCCCAGCACACTGCATGGGGAGAGAAGtgttgaggagagagggagaagggagtgttggggagagagagcgtgagagggagggagggagagaggggtgttggggagagagagggagggagggagagaggggtgatggggagagagagggagggagagagaggggtgttggggagagagagggagggagagaggggtgttggggagagagagggagggagggagagaggggtgttggggagagagagggagggagagagggtgtgagggagagggggagagaggggtattggtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1605374 lncRNA upstream 24924 70223212 ~ 70231898 (+) False G1405630
TU1605371 lncRNA upstream 25357 70227468 ~ 70231465 (+) False G1405630
TU1605379 lncRNA upstream 25357 70227468 ~ 70231465 (+) True G1405630
TU1605430 lncRNA upstream 34176 70222358 ~ 70222646 (+) True G1405663
TU1605346 lncRNA upstream 44167 70212231 ~ 70212655 (+) True LOC110492650
TU1605453 lncRNA downstream 1207 70258637 ~ 70259033 (+) True G1405678
TU1605457 lncRNA downstream 8056 70265486 ~ 70330719 (+) True G1405681
TU1605484 lncRNA downstream 66227 70323657 ~ 70324891 (+) True G1405699
TU1605488 lncRNA downstream 67618 70325048 ~ 70325437 (+) True G1405701
TU1605489 lncRNA downstream 68094 70325524 ~ 70326021 (+) True G1405702
XM_021567080.2 mRNA upstream 44106 70198438 ~ 70212716 (+) False LOC110492650
XM_036947686.1 mRNA upstream 44106 70198462 ~ 70212716 (+) False LOC110492650
XR_002469055.2 mRNA upstream 62392 70191792 ~ 70194430 (+) False LOC110492666
XR_002469054.2 mRNA upstream 62392 70191848 ~ 70194430 (+) False LOC110492666
XM_036947682.1 mRNA upstream 144985 70096449 ~ 70111837 (+) True LOC110492652
XM_021567090.2 mRNA downstream 122899 70380329 ~ 70394365 (+) False LOC110492655
XM_021567088.2 mRNA downstream 122912 70380342 ~ 70394365 (+) True LOC110492655
XM_021567087.2 mRNA downstream 137355 70394785 ~ 70402610 (+) False si:ch211-148l7.4
XM_021567086.2 mRNA downstream 137383 70394813 ~ 70402610 (+) True si:ch211-148l7.4
XM_021567108.2 mRNA downstream 145893 70403323 ~ 70411425 (+) False snrpg
TU1605337 other upstream 124521 70129921 ~ 70132301 (+) True G1405605
TU1604973 other upstream 584148 69671464 ~ 69672674 (+) True G1405310
TU1604870 other upstream 669916 69585989 ~ 69586906 (+) True G1405218
TU1604866 other upstream 673196 69580729 ~ 69583626 (+) False G1405216
TU1606344 other downstream 712185 70969615 ~ 70972604 (+) True G1406381
TU1606401 other downstream 945012 71202442 ~ 71206092 (+) True G1406424
TU1606505 other downstream 952842 71210272 ~ 71210764 (+) True G1406505
TU1606507 other downstream 956947 71214377 ~ 71216430 (+) True G1406507
TU1606508 other downstream 988143 71245573 ~ 71246023 (+) True G1406508

Expression Profile