RNA id: TU1606606


Basic Information

Item Value
RNA id TU1606606
length 346
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G1406556
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 71412967 ~ 71413312 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGGGATGTGCTTCAATCTGAGGAGTTCAGAGCAGAAACATAAGGCCAAAGGGGGAGAAGAAATGAACCTCACTACTCAAATTTCAGTGCTGGTTCAAGTTGCTGAGAACGACAACTACCTTTGCATTTTCCTCCGCTAAGGATTGGGGgaagggaagctgatcctagatctgtacctagtgGAAACTTTACTCTGTAGCAGAAAGACTTAGAGTAGACCTGCCCGTGACAAAGATCACAAATATATAGTGACTCCGGAGGGGATGGCGGCTGTTTTACCTGCTCCTAAACAACtgtgcatttcgctacactcgcattaacatctgctaaccatgtgtatgtgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1606597 lncRNA upstream 703 71409764 ~ 71412264 (+) False LOC110491185
TU1606598 lncRNA upstream 703 71409764 ~ 71412264 (+) True LOC110491185
TU1606625 lncRNA upstream 33848 71378568 ~ 71379119 (+) False G1406573
TU1606627 lncRNA upstream 33848 71378568 ~ 71379119 (+) True G1406573
TU1606565 lncRNA upstream 41577 71365341 ~ 71371390 (+) False G1406531
TU1606605 lncRNA downstream 2056 71415368 ~ 71416378 (+) False G1406555
TU1606604 lncRNA downstream 2587 71415899 ~ 71416378 (+) True G1406555
TU1606757 lncRNA downstream 15383 71428695 ~ 71429226 (+) True G1406672
TU1606753 lncRNA downstream 68802 71482114 ~ 71500637 (+) True LOC110517572
TU1606774 lncRNA downstream 75953 71489265 ~ 71489622 (+) True G1406688
XM_036947704.1 mRNA upstream 1954 71381355 ~ 71411013 (+) False LOC110491185
XM_036947703.1 mRNA upstream 1954 71381356 ~ 71411013 (+) False LOC110491185
XM_036947702.1 mRNA upstream 1954 71381358 ~ 71411013 (+) False LOC110491185
XM_036945798.1 mRNA upstream 50495 71286546 ~ 71362472 (+) True LOC110491184
XR_005036617.1 mRNA upstream 214934 71197267 ~ 71198033 (+) False LOC118939583
XM_036945799.1 mRNA downstream 5464 71418776 ~ 71500706 (+) False LOC110517572
trnat-agu-71 mRNA downstream 136194 71549506 ~ 71549579 (+) True trnat-agu-71
trnat-agu-72 mRNA downstream 137284 71550596 ~ 71550669 (+) True trnat-agu-72
trnat-agu-73 mRNA downstream 141637 71554949 ~ 71555022 (+) True trnat-agu-73
trnat-agu-74 mRNA downstream 142727 71556039 ~ 71556112 (+) True trnat-agu-74
TU1606510 other upstream 155990 71255979 ~ 71256977 (+) True G1406510
TU1606509 other upstream 161323 71251074 ~ 71251644 (+) True G1406509
TU1606508 other upstream 166944 71245573 ~ 71246023 (+) True G1406508
TU1606507 other upstream 196537 71214377 ~ 71216430 (+) True G1406507
TU1606505 other upstream 202203 71210272 ~ 71210764 (+) True G1406505
TU1606601 other downstream 245 71413557 ~ 71415797 (+) False G1406555
TU1606602 other downstream 2587 71415899 ~ 71416427 (+) False G1406555
TU1607441 other downstream 690074 72103386 ~ 72103841 (+) True G1407190
TU1607455 other downstream 803001 72216313 ~ 72279555 (+) True G1407199
TU1607753 other downstream 1228671 72641983 ~ 72644864 (+) True ngrn

Expression Profile