RNA id: TU1606784


Basic Information

Item Value
RNA id TU1606784
length 717
lncRNA type intronic
GC content 0.39
exon number 3
gene id G1406694
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 71428696 ~ 71431312 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATAGTTTGGAACGGTCATCCAACACGCAAGCATCTTTCTACAGCAGACCTGAAGTTCACGGGCATCACGATTTGACTTTTCCCAGAGTTCCCTGTTCTCTTAAATACCATCAGATGCATGAACATCAgtctagtaaaataaaaagctaATGATTTGAGCAAATGATGCTcagctgtgataatgtattagatcAGGCATATAGCCaacatgctgtgataatgtattagaccaggcatatagccaatatgctgtgataatgtattagaccaggcatatagccaatatgctgtgataatgtattagaccaggcatatagccaatatgctgtgataatgtattagaccaggcatatagccaatatgctgtgataatgtattagaccaggcatatagccaacatgctgtgataatgtattagaccaggcatatagccaacatgctgtgataatgtattagaccaggcatatagccaatatgctgtgacaATGTATTAAgccaggcacatagccaatatgctgtgataatgtattaggccaggcacatagccaatatgctgtgataatgtattagaccaggcacatagccaatatgctgtgataatgtattaggccaggcacatagccaatatgctgtgataatgtattaggccaggcacatagccaatatgctgtgataatgtattagaccaggcacatagccaacatgctgtgataatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1606727 lncRNA downstream 40985 71382839 ~ 71387711 (-) True G1406649
TU1606729 lncRNA downstream 42733 71384608 ~ 71385963 (-) True G1406651
TU1606716 lncRNA downstream 51070 71377415 ~ 71377626 (-) True G1406644
TU1606715 lncRNA downstream 54090 71374252 ~ 71374606 (-) True G1406643
TU1606714 lncRNA downstream 65229 71362903 ~ 71363467 (-) True G1406642
TU1606795 lncRNA upstream 57956 71489268 ~ 71489622 (-) True G1406705
TU1606863 lncRNA upstream 69806 71501118 ~ 71512467 (-) False G1406752
TU1606848 lncRNA upstream 71167 71502479 ~ 71528807 (-) False G1406752
TU1606862 lncRNA upstream 71167 71502479 ~ 71523662 (-) False G1406752
TU1606857 lncRNA upstream 71887 71503199 ~ 71514394 (-) False G1406752
trnah-gug-49 mRNA downstream 383095 71045530 ~ 71045601 (-) True trnah-gug-49
trnat-agu-70 mRNA downstream 384112 71044511 ~ 71044584 (-) True trnat-agu-70
trnat-agu-69 mRNA downstream 385488 71043135 ~ 71043208 (-) True trnat-agu-69
trnat-agu-68 mRNA downstream 386864 71041759 ~ 71041832 (-) True trnat-agu-68
trnat-agu-67 mRNA downstream 388225 71040398 ~ 71040471 (-) True trnat-agu-67
XM_036947711.1 mRNA upstream 310664 71741976 ~ 71752020 (-) False LOC110492672
XM_036947713.1 mRNA upstream 310664 71741976 ~ 71752084 (-) False LOC110492672
XM_036947712.1 mRNA upstream 310664 71741976 ~ 71753137 (-) False LOC110492672
XM_036947710.1 mRNA upstream 310664 71741976 ~ 71753622 (-) False LOC110492672
XM_036947714.1 mRNA upstream 310664 71741976 ~ 71764421 (-) True LOC110492672
TU1606514 other downstream 167879 71260322 ~ 71260817 (-) True G1406514
TU1606185 other downstream 686517 70735647 ~ 70742179 (-) True G1406228
TU1605893 other downstream 1207440 70219877 ~ 70221256 (-) True LOC110492660
TU1605761 other downstream 1333155 70078657 ~ 70095541 (-) True G1405917
TU1604821 other downstream 1910583 69517755 ~ 69518113 (-) True G1405172
TU1606849 other upstream 71167 71502479 ~ 71527677 (-) False G1406752
TU1606887 other upstream 97767 71529079 ~ 71545845 (-) False G1406752
TU1606851 other upstream 103253 71534565 ~ 71544501 (-) False G1406752
TU1606876 other upstream 105000 71536312 ~ 71545845 (-) False G1406752
TU1606900 other upstream 108646 71539958 ~ 71543469 (-) True G1406760

Expression Profile