RNA id: TU1606779


Basic Information

Item Value
RNA id TU1606779
length 387
lncRNA type intronic
GC content 0.37
exon number 4
gene id G1406690
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 71497144 ~ 71498132 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgaataataataatgatgaggaaaaatatcatggctatatacaggaagtaccaggtaataacatggttatatacaggaagtaccaggtaataacatggttatatacaggaagtaccaggtaataacatggctatatacaggaagtaccaggtaatatcatggctatatacagggagtaccaggtaataacatggttatatacagggagtaccaggtaataacatggctatatacagggaggtaataacatggctatatacagggaggtaataacatggttatatacagggagtaccaggtaataacatggttatatacaggaagtaccaggtaataacatggctatatacagtgtatttggaGCAGCtacagcagcagtgtatgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1606774 lncRNA upstream 7522 71489265 ~ 71489622 (+) True G1406688
TU1606757 lncRNA upstream 67918 71428695 ~ 71429226 (+) True G1406672
TU1606605 lncRNA upstream 80766 71415368 ~ 71416378 (+) False G1406555
TU1606604 lncRNA upstream 80766 71415899 ~ 71416378 (+) True G1406555
TU1606606 lncRNA upstream 83832 71412967 ~ 71413312 (+) True G1406556
TU1606803 lncRNA downstream 4438 71502570 ~ 71503594 (+) True G1406710
TU1606833 lncRNA downstream 39795 71537927 ~ 71541379 (+) True G1406739
TU1606908 lncRNA downstream 62117 71560249 ~ 71560716 (+) True trnat-agu-75
TU1606914 lncRNA downstream 105739 71603871 ~ 71606427 (+) True G1406773
TU1606931 lncRNA downstream 121415 71619547 ~ 71619958 (+) True G1406785
XM_036947704.1 mRNA upstream 86131 71381355 ~ 71411013 (+) False LOC110491185
XM_036947703.1 mRNA upstream 86131 71381356 ~ 71411013 (+) False LOC110491185
XM_036947702.1 mRNA upstream 86131 71381358 ~ 71411013 (+) False LOC110491185
XM_036945798.1 mRNA upstream 134672 71286546 ~ 71362472 (+) True LOC110491184
XR_005036617.1 mRNA upstream 299111 71197267 ~ 71198033 (+) False LOC118939583
trnat-agu-71 mRNA downstream 51374 71549506 ~ 71549579 (+) True trnat-agu-71
trnat-agu-72 mRNA downstream 52464 71550596 ~ 71550669 (+) True trnat-agu-72
trnat-agu-73 mRNA downstream 56817 71554949 ~ 71555022 (+) True trnat-agu-73
trnat-agu-74 mRNA downstream 57907 71556039 ~ 71556112 (+) True trnat-agu-74
trnat-agu-75 mRNA downstream 62272 71560404 ~ 71560477 (+) False trnat-agu-75
TU1606602 other upstream 80717 71415899 ~ 71416427 (+) False G1406555
TU1606601 other upstream 81347 71413557 ~ 71415797 (+) False G1406555
TU1606510 other upstream 240167 71255979 ~ 71256977 (+) True G1406510
TU1606509 other upstream 245500 71251074 ~ 71251644 (+) True G1406509
TU1606508 other upstream 251121 71245573 ~ 71246023 (+) True G1406508
TU1607441 other downstream 605254 72103386 ~ 72103841 (+) True G1407190
TU1607455 other downstream 718181 72216313 ~ 72279555 (+) True G1407199
TU1607753 other downstream 1143851 72641983 ~ 72644864 (+) True ngrn
TU1607815 other downstream 1267770 72765902 ~ 72769218 (+) True G1407509
TU1607846 other downstream 1310598 72808730 ~ 72816723 (+) True LOC110492598

Expression Profile