RNA id: TU1606863


Basic Information

Item Value
RNA id TU1606863
length 1544
lncRNA type inter_gene
GC content 0.37
exon number 4
gene id G1406752
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 71501118 ~ 71547366 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagaggagacatcaggtctattatccacatggaactaaaagacatcaggtctgttatccacatggaactaaaagacatcaggtatattatccacatggaactaaaagacatcaggtctattatccacatggagataaaagaggagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggagataaaagaggagacatcaggtatattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagaggagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctgttatccacatggaactaaaagacatcaggtctgttatccacatggaactaaaagtcatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctgttatcaacatggaactaaaagacatcaggtctattatccacatggaactaaaagaggagacatcaggtctattatccacatggaactaaaatacatcatgtctattatccacatggagataaaagaggagacatcaggtctattgtccacatggaactaaaatacatttCCCAAATGGCAAAACTAAGAGATATTTTCCTGAACTTTCTGGACTAAAAACACTGTCTAATCTCCTGCACTAAAAAACACTGTCTAATCTCCTGCACTAAAAAACACTGTCTAATCTCCTGCACTAAAAAACACTGTCTAATCTCCTGGATTAAAAACACTGTCTAATCTCCTGGATTAAAAACACTGTCTAATCTCCAGAACTAAAAAACACTGTCTAATCTCCAGAACTAAAAACACTGTCTAATCTCCTGCACTAAAAAACACTGTATAATCTCCAGAACTAAAAAGCACTGTCTAATCTCCTGGATTAAAAACACTGTCTAATCTCCAGGACTAAAAAACACTGTCTAATCTCCTGCACTAAAAACACTGTCTAATCTCCTGCACTAAAAACACTGTCTAATCTCCTGCACTAAAAAACACTGTCTAATCTCCTGCACTAAAAAACACTGTCTAATCTCCTGGATTAAAAACACTGTCTAATCTCCAGGACTAAAAAACACTGTCTAATCTCCTGCACTAAAAACACTGTCTAATCTCCTGCACTAAAAACACTGTCTAATCTCCTGCACTAAAAAACACTGTCTAATCTCCTGCACTAAAAACACTGTCTAATCTCCTGCACTAAAAAACACTGTCTAATCTCCTGGATTAAAAACACTGTCTAATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1606795 lncRNA downstream 11496 71489268 ~ 71489622 (-) True G1406705
TU1606784 lncRNA downstream 69806 71428696 ~ 71431312 (-) True G1406694
TU1606783 lncRNA downstream 70958 71428696 ~ 71430160 (-) False G1406694
TU1606727 lncRNA downstream 113407 71382839 ~ 71387711 (-) True G1406649
TU1606729 lncRNA downstream 115155 71384608 ~ 71385963 (-) True G1406651
TU1606892 lncRNA upstream 1666 71514133 ~ 71522942 (-) False G1406752
TU1606886 lncRNA upstream 8266 71520733 ~ 71522942 (-) False G1406752
TU1606874 lncRNA upstream 10673 71523140 ~ 71524105 (-) False G1406752
TU1606877 lncRNA upstream 11374 71523841 ~ 71532303 (-) False G1406752
TU1606872 lncRNA upstream 16612 71529079 ~ 71547366 (-) False G1406752
trnah-gug-49 mRNA downstream 455517 71045530 ~ 71045601 (-) True trnah-gug-49
trnat-agu-70 mRNA downstream 456534 71044511 ~ 71044584 (-) True trnat-agu-70
trnat-agu-69 mRNA downstream 457910 71043135 ~ 71043208 (-) True trnat-agu-69
trnat-agu-68 mRNA downstream 459286 71041759 ~ 71041832 (-) True trnat-agu-68
trnat-agu-67 mRNA downstream 460647 71040398 ~ 71040471 (-) True trnat-agu-67
XM_036947711.1 mRNA upstream 229509 71741976 ~ 71752020 (-) False LOC110492672
XM_036947713.1 mRNA upstream 229509 71741976 ~ 71752084 (-) False LOC110492672
XM_036947712.1 mRNA upstream 229509 71741976 ~ 71753137 (-) False LOC110492672
XM_036947710.1 mRNA upstream 229509 71741976 ~ 71753622 (-) False LOC110492672
XM_036947714.1 mRNA upstream 229509 71741976 ~ 71764421 (-) True LOC110492672
TU1606514 other downstream 240301 71260322 ~ 71260817 (-) True G1406514
TU1606185 other downstream 758939 70735647 ~ 70742179 (-) True G1406228
TU1605893 other downstream 1279862 70219877 ~ 70221256 (-) True LOC110492660
TU1605761 other downstream 1405577 70078657 ~ 70095541 (-) True G1405917
TU1604821 other downstream 1983005 69517755 ~ 69518113 (-) True G1405172
TU1606887 other upstream 16612 71529079 ~ 71545845 (-) False G1406752
TU1606851 other upstream 22098 71534565 ~ 71544501 (-) False G1406752
TU1606876 other upstream 23845 71536312 ~ 71545845 (-) False G1406752
TU1606900 other upstream 27491 71539958 ~ 71543469 (-) True G1406760
TU1607973 other upstream 819339 72331806 ~ 72332715 (-) True G1407628

Expression Profile