RNA id: TU1606887


Basic Information

Item Value
RNA id TU1606887
length 1525
RNA type TUCP
GC content 0.36
exon number 2
gene id G1406752
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 71501118 ~ 71547366 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaatacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagatatcaggtctattatccacatggaactaaaagatatcaggtctattatccacatggaactaaaagaggagacatcaggtctattatccacatggaactaaaatacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaatacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctgttatccacatggaactaaaagaggagacatcaggtctattatccacatggaactaaaatacatcaggtctattatccacatggagataaaagaggagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctgttatccacatggaactaaaatacatcaggtctattatccacatggaactaaaatacatcaggtctataatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagatatcaggtctattatccacatggaactaaaagatatcaggtctattatccacatggaactaaaagaggagacatcaggtctattatccacatggaactaaaatacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaatacatcaggtctattatccacatggaactataatacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagatatcaggtctattatccacatggaactaaaagatatcaggtctattatccacatggaactaaaagaggagacatcaggtctattatccacatggaactaaaatacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctgttatccacatggaactaaaagaggagacatcaggtctattatccacatggaactaaaatacatcaggtctattatccacatggagataaaagaggagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1606848 lncRNA downstream 272 71502479 ~ 71528807 (-) False G1406752
TU1606874 lncRNA downstream 4974 71523140 ~ 71524105 (-) False G1406752
TU1606862 lncRNA downstream 5417 71502479 ~ 71523662 (-) False G1406752
TU1606892 lncRNA downstream 6137 71514133 ~ 71522942 (-) False G1406752
TU1606886 lncRNA downstream 6137 71520733 ~ 71522942 (-) False G1406752
TU1606903 lncRNA upstream 5230 71551075 ~ 71551546 (-) True G1406762
TU1606905 lncRNA upstream 10726 71556571 ~ 71556854 (-) True G1406764
TU1606906 lncRNA upstream 11409 71557254 ~ 71557499 (-) True G1406765
TU1606907 lncRNA upstream 11921 71557766 ~ 71558190 (-) True G1406766
TU1607052 lncRNA upstream 73585 71619430 ~ 71620029 (-) True G1406895
trnah-gug-49 mRNA downstream 483478 71045530 ~ 71045601 (-) True trnah-gug-49
trnat-agu-70 mRNA downstream 484495 71044511 ~ 71044584 (-) True trnat-agu-70
trnat-agu-69 mRNA downstream 485871 71043135 ~ 71043208 (-) True trnat-agu-69
trnat-agu-68 mRNA downstream 487247 71041759 ~ 71041832 (-) True trnat-agu-68
trnat-agu-67 mRNA downstream 488608 71040398 ~ 71040471 (-) True trnat-agu-67
XM_036947711.1 mRNA upstream 196131 71741976 ~ 71752020 (-) False LOC110492672
XM_036947713.1 mRNA upstream 196131 71741976 ~ 71752084 (-) False LOC110492672
XM_036947712.1 mRNA upstream 196131 71741976 ~ 71753137 (-) False LOC110492672
XM_036947710.1 mRNA upstream 196131 71741976 ~ 71753622 (-) False LOC110492672
XM_036947714.1 mRNA upstream 196131 71741976 ~ 71764421 (-) True LOC110492672
TU1606849 other downstream 1402 71502479 ~ 71527677 (-) False G1406752
TU1606514 other downstream 268262 71260322 ~ 71260817 (-) True G1406514
TU1606185 other downstream 786900 70735647 ~ 70742179 (-) True G1406228
TU1605893 other downstream 1307823 70219877 ~ 70221256 (-) True LOC110492660
TU1605761 other downstream 1433538 70078657 ~ 70095541 (-) True G1405917
TU1607973 other upstream 785961 72331806 ~ 72332715 (-) True G1407628
TU1608117 other upstream 889584 72435429 ~ 72437847 (-) True G1407755
TU1609186 other upstream 1684967 73230812 ~ 73232954 (-) True G1408615
TU1609394 other upstream 2224011 73769856 ~ 73777357 (-) False ppdpfb
TU1609397 other upstream 2224259 73770104 ~ 73777357 (-) False ppdpfb

Expression Profile