RNA id: TU1606851


Basic Information

Item Value
RNA id TU1606851
length 838
RNA type TUCP
GC content 0.36
exon number 3
gene id G1406752
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 71501118 ~ 71547366 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctgttatccacatggaactaaaatacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctgttatccacatggaactaaaatacatcaggtctattatccacatggaactaaaataaatcaggtctataatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagaggagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctagttatccacatggaactaaaatacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagatatcaggtctattatccacatggaactaaaatacatcaggtctattatccacatggaactaaaagaggagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1606877 lncRNA downstream 2262 71523841 ~ 71532303 (-) False G1406752
TU1606848 lncRNA downstream 5758 71502479 ~ 71528807 (-) False G1406752
TU1606874 lncRNA downstream 10460 71523140 ~ 71524105 (-) False G1406752
TU1606862 lncRNA downstream 10903 71502479 ~ 71523662 (-) False G1406752
TU1606892 lncRNA downstream 11623 71514133 ~ 71522942 (-) False G1406752
TU1606903 lncRNA upstream 6574 71551075 ~ 71551546 (-) True G1406762
TU1606905 lncRNA upstream 12070 71556571 ~ 71556854 (-) True G1406764
TU1606906 lncRNA upstream 12753 71557254 ~ 71557499 (-) True G1406765
TU1606907 lncRNA upstream 13265 71557766 ~ 71558190 (-) True G1406766
TU1607052 lncRNA upstream 74929 71619430 ~ 71620029 (-) True G1406895
trnah-gug-49 mRNA downstream 488964 71045530 ~ 71045601 (-) True trnah-gug-49
trnat-agu-70 mRNA downstream 489981 71044511 ~ 71044584 (-) True trnat-agu-70
trnat-agu-69 mRNA downstream 491357 71043135 ~ 71043208 (-) True trnat-agu-69
trnat-agu-68 mRNA downstream 492733 71041759 ~ 71041832 (-) True trnat-agu-68
trnat-agu-67 mRNA downstream 494094 71040398 ~ 71040471 (-) True trnat-agu-67
XM_036947711.1 mRNA upstream 197475 71741976 ~ 71752020 (-) False LOC110492672
XM_036947713.1 mRNA upstream 197475 71741976 ~ 71752084 (-) False LOC110492672
XM_036947712.1 mRNA upstream 197475 71741976 ~ 71753137 (-) False LOC110492672
XM_036947710.1 mRNA upstream 197475 71741976 ~ 71753622 (-) False LOC110492672
XM_036947714.1 mRNA upstream 197475 71741976 ~ 71764421 (-) True LOC110492672
TU1606849 other downstream 6888 71502479 ~ 71527677 (-) False G1406752
TU1606514 other downstream 273748 71260322 ~ 71260817 (-) True G1406514
TU1606185 other downstream 792386 70735647 ~ 70742179 (-) True G1406228
TU1605893 other downstream 1313309 70219877 ~ 70221256 (-) True LOC110492660
TU1605761 other downstream 1439024 70078657 ~ 70095541 (-) True G1405917
TU1607973 other upstream 787305 72331806 ~ 72332715 (-) True G1407628
TU1608117 other upstream 890928 72435429 ~ 72437847 (-) True G1407755
TU1609186 other upstream 1686311 73230812 ~ 73232954 (-) True G1408615
TU1609394 other upstream 2225355 73769856 ~ 73777357 (-) False ppdpfb
TU1609397 other upstream 2225603 73770104 ~ 73777357 (-) False ppdpfb

Expression Profile