RNA id: TU1607138


Basic Information

Item Value
RNA id TU1607138
length 1154
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1406943
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 71698985 ~ 71700138 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTATCCCAATATTTTTTCTTCCGTTTTGACATGTACAAGGATCACAGGTGGAACCTTAATTAGGGAGGGAcgggggctcgtggtaatgactggagtggaaataagtggaatgatatcaaatacatcaaacacatggtttccatgagtTCGATGCCGTTGCattcgctctgttccagccattattatgagctgtcctcccgtcaccagcctccactgacgaGGATAACATACACAGTTGGGAACATACACAGTTAAATAATTATGTTTTGGCTTTTATTCTTGTCaaagccaagtctaggacaaaaaggcttctcaacagtttttaccccacaagccataagactcctgaacaggtaatcaaatggctacccggactatttgcattgtgtgcccccccaacccctcgtttacgctgctactctctgtttatcatatatgcatagtcactttaactatacattcatgtgcaTACTACCtgaattgggccgaccaaccagtgctccctcacattggctaaccgggctatctgtattgtgtcccaccacccaccaacccctcctttacgctgctgctacactctgttcatcatatacgcatagtcactttaaccatatctacatgtacatactacctcaatcagcctgactaacctgtgtctgtatgtagcctcgctacatttatagcctcgctactgtagatagcctgtctttttactgttgttttatttctttacttacttattgttcacctaacacctttttttgcactattggttagagcctgtaagtaagcatttcactgtaagactgtacacctgttgtattcagcgcccGTGACaagtaaactttgatttgatttgatttgaacgggGTATGCTGTAATGTCCCAGAAATCCATTGTTTTCATTTCCTGTACGAGGTTTATGGGAAAAACACCTGCTGACATGTTTATTCAATGGTCATGTTCATCTGTGAGGTTTAACCAGAGGTTGTGTAACTGTGACACATGTGGAagataaatgtaaaatgtaaaataataCACACACTTCTGTTATCTAAAATAATACATTGTagcctcaaaaaaaaaaaaattgtctttAAATAAAGATTGCTTCCACTTTTCTATTTTCAGATTTGGAAAACTGTGACTGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1607119 lncRNA downstream 5018 71693716 ~ 71693967 (-) True G1406938
TU1607117 lncRNA downstream 6370 71692357 ~ 71692615 (-) True G1406936
TU1607114 lncRNA downstream 8840 71689824 ~ 71690145 (-) True G1406933
TU1607098 lncRNA downstream 25109 71673593 ~ 71673876 (-) True G1406924
TU1607092 lncRNA downstream 35745 71663004 ~ 71663240 (-) True G1406918
TU1607104 lncRNA upstream 815 71700953 ~ 71705844 (-) True G1406926
TU1607143 lncRNA upstream 10342 71710480 ~ 71710735 (-) True G1406945
TU1607197 lncRNA upstream 144651 71844789 ~ 71846619 (-) False LOC118939585
TU1607198 lncRNA upstream 144651 71844789 ~ 71847315 (-) False LOC118939585
TU1607200 lncRNA upstream 144651 71844789 ~ 71846619 (-) True LOC118939585
trnah-gug-49 mRNA downstream 653384 71045530 ~ 71045601 (-) True trnah-gug-49
trnat-agu-70 mRNA downstream 654401 71044511 ~ 71044584 (-) True trnat-agu-70
trnat-agu-69 mRNA downstream 655777 71043135 ~ 71043208 (-) True trnat-agu-69
trnat-agu-68 mRNA downstream 657153 71041759 ~ 71041832 (-) True trnat-agu-68
trnat-agu-67 mRNA downstream 658514 71040398 ~ 71040471 (-) True trnat-agu-67
XM_036947711.1 mRNA upstream 41838 71741976 ~ 71752020 (-) False LOC110492672
XM_036947713.1 mRNA upstream 41838 71741976 ~ 71752084 (-) False LOC110492672
XM_036947712.1 mRNA upstream 41838 71741976 ~ 71753137 (-) False LOC110492672
XM_036947710.1 mRNA upstream 41838 71741976 ~ 71753622 (-) False LOC110492672
XM_036947714.1 mRNA upstream 41838 71741976 ~ 71764421 (-) True LOC110492672
TU1606887 other downstream 153140 71529079 ~ 71545845 (-) False G1406752
TU1606876 other downstream 153140 71536312 ~ 71545845 (-) False G1406752
TU1606851 other downstream 154484 71534565 ~ 71544501 (-) False G1406752
TU1606900 other downstream 155516 71539958 ~ 71543469 (-) True G1406760
TU1606849 other downstream 171308 71502479 ~ 71527677 (-) False G1406752
TU1607973 other upstream 631668 72331806 ~ 72332715 (-) True G1407628
TU1608117 other upstream 735291 72435429 ~ 72437847 (-) True G1407755
TU1609186 other upstream 1530674 73230812 ~ 73232954 (-) True G1408615
TU1609394 other upstream 2069718 73769856 ~ 73777357 (-) False ppdpfb
TU1609397 other upstream 2069966 73770104 ~ 73777357 (-) False ppdpfb

Expression Profile