RNA id: TU1607143


Basic Information

Item Value
RNA id TU1607143
length 256
lncRNA type antisense_over
GC content 0.58
exon number 1
gene id G1406945
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 71710480 ~ 71710735 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTTGATGATCCTGAACAGTTCAGatagtgttgttttgttaataCCGGGACCCCCTCTGAGCTCTGTCCCACGTGGCAGTCTGACTCTGGGGCAATGCCGTGGTGGTGCTGGCTGTGATGGTGGGATGCTGCATCACTGCTGTCTGCCGACATGGCCTCTGAGGACTCCATGCCCATACCGCTCTCCGACGGCTCCTCCATTCCGGAGCCCGACGGACCCACATCACTGCTgctctccacctctatctccccTTC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1607104 lncRNA downstream 4636 71700953 ~ 71705844 (-) True G1406926
TU1607138 lncRNA downstream 10342 71698985 ~ 71700138 (-) False G1406943
TU1607129 lncRNA downstream 10438 71699497 ~ 71700042 (-) True G1406943
TU1607126 lncRNA downstream 11074 71698985 ~ 71699406 (-) False G1406943
TU1607135 lncRNA downstream 11074 71699098 ~ 71699406 (-) False G1406943
TU1607197 lncRNA upstream 134054 71844789 ~ 71846619 (-) False LOC118939585
TU1607198 lncRNA upstream 134054 71844789 ~ 71847315 (-) False LOC118939585
TU1607200 lncRNA upstream 134054 71844789 ~ 71846619 (-) True LOC118939585
TU1607192 lncRNA upstream 142195 71852930 ~ 71854489 (-) False LOC110492674
TU1607194 lncRNA upstream 142195 71852930 ~ 71854489 (-) False LOC110492674
trnah-gug-49 mRNA downstream 664879 71045530 ~ 71045601 (-) True trnah-gug-49
trnat-agu-70 mRNA downstream 665896 71044511 ~ 71044584 (-) True trnat-agu-70
trnat-agu-69 mRNA downstream 667272 71043135 ~ 71043208 (-) True trnat-agu-69
trnat-agu-68 mRNA downstream 668648 71041759 ~ 71041832 (-) True trnat-agu-68
trnat-agu-67 mRNA downstream 670009 71040398 ~ 71040471 (-) True trnat-agu-67
XM_036947711.1 mRNA upstream 31241 71741976 ~ 71752020 (-) False LOC110492672
XM_036947713.1 mRNA upstream 31241 71741976 ~ 71752084 (-) False LOC110492672
XM_036947712.1 mRNA upstream 31241 71741976 ~ 71753137 (-) False LOC110492672
XM_036947710.1 mRNA upstream 31241 71741976 ~ 71753622 (-) False LOC110492672
XM_036947714.1 mRNA upstream 31241 71741976 ~ 71764421 (-) True LOC110492672
TU1606887 other downstream 164635 71529079 ~ 71545845 (-) False G1406752
TU1606876 other downstream 164635 71536312 ~ 71545845 (-) False G1406752
TU1606851 other downstream 165979 71534565 ~ 71544501 (-) False G1406752
TU1606900 other downstream 167011 71539958 ~ 71543469 (-) True G1406760
TU1606849 other downstream 182803 71502479 ~ 71527677 (-) False G1406752
TU1607973 other upstream 621071 72331806 ~ 72332715 (-) True G1407628
TU1608117 other upstream 724694 72435429 ~ 72437847 (-) True G1407755
TU1609186 other upstream 1520077 73230812 ~ 73232954 (-) True G1408615
TU1609394 other upstream 2059121 73769856 ~ 73777357 (-) False ppdpfb
TU1609397 other upstream 2059369 73770104 ~ 73777357 (-) False ppdpfb

Expression Profile