RNA id: TU1609108


Basic Information

Item Value
RNA id TU1609108
length 1460
lncRNA type antisense_over
GC content 0.43
exon number 4
gene id G1408561
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 73068362 ~ 73070422 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTTCATAAATCCTTTATCTTTAAACATAGCCTGCTGCAGGTCATCAAATGGGATCAGGCGTGTTGACACAGCTTTAGCAATTTACAGGCCCACATACTCAATGATAATTTGACAAATATACAGCAGAATATGAACCTGAACAAGCAGTCACCCTCCAGGTCAGTCACTCCTCCAGGACAGTCACTCCTCCAGGACAGTCACTCCTCCAGGATAGTCACCCCTCCAGGACAGTCACTCCTCCAGGACAGTCACCCCTCCAGGACAGTCACCCCTCCAGGACAGTCCCCCCTCCAGGATAGTCACCCCTCCAGGACAGTCACCCCTCCAGGACAGTCCCCCCCCCAGGACAGTCACCCCTCCAGGACAGTCATTGGACCTTCTACAGTCATTTTATTACAGTCGATTTCCACAAAATGGACAGCACTTGTGACAATAATGTAAACACAATCATTAACATTATGGCCGAGTTCTGATCCGATCGCGCCTTTCACCTTTTAAAGGCAACGTTTCCACACTcacggagactgcattcacggtaaactctGCACATGTCACCTCGGAAGTGACCTTTAAAATGTCAAACGCGCTACACCGCTGATCTACAGCTGATCAGATTGCATCCcggtctgtttctcaaacaaaATGACACAAAACAGAATACTTATTGTGATGCTCATCTAACGATTTTCATGATCTGCACAATTTTTTTGTGTCCCAACTAAAATATGAGGTGCGTTAGTCAAATATAATCATTTCAAACACAGACAGATTGAACAATCTTTACATAATGATGCTTatgcagcagtggaggctgctgagaggCAGTAAATTGTTATTTGTATCCCAAAGTGTGTGTAATTGTGTAACATTGTAAACATTCATGTTAAAGTCAATCAAACTACATATGCAGAGAGACTACTTCAAAGTTGAAATCAAAAGCAACTCATTCTTAGTTGTCATTCTCAATTCATCTATAAAGGCACACAAAGGTTCTGagttataaatataaattaaATGAATAGATTGTTTTGTCTTTTATCATTTGGAATGTTTTTGCtagattttttttgttaaaaaataaattaataatacCTTAACAAAAATTCCTaatacacacaaaacaaactcaATCAAACTATAAATCCTAAACCTGAGCTGTGCTGTGGTAGCCTGAGTCCCAGATCTCTTTGTACTGTCTTCTCAAGTCCAATGTCTTAGAGTTGGCAAGAGAGCCCAAACCGATGTGGGACTCAGGCTAGTGCTGTGGTCAGACAGGCCTGAAGCAGCCAACGTGTTGTGGGGAGGCGGCCTGCATTAGATAGTCCTCTATGTGTTCCTCTACAGTTGAGTACAGGCCCTGGACTTGGTCCTTGAAGGGAGGATGCCACGCCCACAAGATGgccaccgccaccatggacaggAGCAGTGATAGTAGAACACAGAGCCATATCCACGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1609106 lncRNA downstream 18291 73048184 ~ 73050071 (-) True G1408560
TU1609066 lncRNA downstream 40399 73026985 ~ 73027963 (-) True G1408524
TU1608386 lncRNA downstream 101892 72966259 ~ 72966470 (-) True G1407991
TU1608384 lncRNA downstream 106447 72961549 ~ 72961915 (-) True G1407989
TU1608373 lncRNA downstream 117854 72947609 ~ 72950508 (-) True G1407979
TU1609055 lncRNA upstream 13355 73083777 ~ 73090354 (-) True G1408513
TU1609132 lncRNA upstream 22049 73092471 ~ 73098182 (-) True si:ch211-150o23.3
TU1609135 lncRNA upstream 23625 73094047 ~ 73094744 (-) True G1408571
TU1609137 lncRNA upstream 30997 73101419 ~ 73101711 (-) True G1408573
TU1609059 lncRNA upstream 42994 73113416 ~ 73115117 (-) True G1408517
XM_036947748.1 mRNA downstream 20690 73040535 ~ 73047672 (-) True LOC110492600
XM_036947746.1 mRNA downstream 138596 72904370 ~ 72929766 (-) False LOC110491158
XM_036947745.1 mRNA downstream 138597 72904370 ~ 72929765 (-) False LOC110491158
XM_036947731.1 mRNA downstream 384735 72646017 ~ 72683627 (-) True LOC110492692
XM_036947737.1 mRNA downstream 426989 72620726 ~ 72641373 (-) True LOC110492693
XM_021567036.2 mRNA upstream 21999 73092421 ~ 73100266 (-) False si:ch211-150o23.3
XM_021567037.2 mRNA upstream 21999 73092421 ~ 73100266 (-) False si:ch211-150o23.3
XR_005036623.1 mRNA upstream 45001 73115423 ~ 73144288 (-) False LOC110491162
XM_036947753.1 mRNA upstream 48463 73118885 ~ 73142587 (-) False LOC110491162
XM_036947752.1 mRNA upstream 48463 73118885 ~ 73144288 (-) False LOC110491162
TU1608117 other downstream 630515 72435429 ~ 72437847 (-) True G1407755
TU1607973 other downstream 735647 72331806 ~ 72332715 (-) True G1407628
TU1606876 other downstream 1522517 71536312 ~ 71545845 (-) False G1406752
TU1606851 other downstream 1523861 71534565 ~ 71544501 (-) False G1406752
TU1609186 other upstream 160390 73230812 ~ 73232954 (-) True G1408615
TU1609394 other upstream 699434 73769856 ~ 73777357 (-) False ppdpfb
TU1609397 other upstream 699682 73770104 ~ 73777357 (-) False ppdpfb
TU1609392 other upstream 699728 73770150 ~ 73777357 (-) False ppdpfb
TU1609395 other upstream 699728 73770150 ~ 73777357 (-) False ppdpfb

Expression Profile