RNA id: TU1608585


Basic Information

Item Value
RNA id TU1608585
length 351
lncRNA type intronic
GC content 0.40
exon number 1
gene id G1408154
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 73385382 ~ 73385732 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATGTGGAAATGGAGCATGTTGAGGTGACCCTGGATTGTTGTGAATGTATTATAatgtaaaattgtataaactgcctcaATTTTTctggaccccatgaagagtaggcagcagctaatggggatccataataaatacaaatacaagaaTGCAGGATGCAGCCCCAGTCTTATCCTTGGAGAgacttaaagacatgctccggaaaTTAGGCGACTAagtaagtatttttttaaatctcccGCTTTGGACTGGATGTGTCCATGTGTAGTTCATAcgtgcataatctatgagcagagtTACTAGCTTACTtcaattagccacaaaatccctggtttgaaagtgactttttgga

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1608583 lncRNA upstream 4229 73380913 ~ 73381153 (+) True G1408152
TU1608582 lncRNA upstream 4597 73380501 ~ 73380785 (+) True G1408151
TU1608541 lncRNA upstream 22556 73362378 ~ 73362826 (+) True G1408116
TU1608571 lncRNA upstream 24480 73360361 ~ 73360902 (+) True G1408141
TU1608568 lncRNA upstream 24733 73360361 ~ 73360649 (+) False G1408141
TU1608589 lncRNA downstream 5547 73391279 ~ 73391542 (+) True G1408158
TU1608610 lncRNA downstream 40015 73425747 ~ 73426266 (+) False G1408176
TU1608624 lncRNA downstream 45786 73431518 ~ 73433010 (+) True G1408183
TU1608662 lncRNA downstream 115381 73501113 ~ 73501450 (+) True G1408214
TU1608670 lncRNA downstream 130576 73516308 ~ 73520643 (+) True G1408222
XM_036947762.1 mRNA upstream 66795 73288840 ~ 73318587 (+) False LOC110491163
XM_036947763.1 mRNA upstream 66795 73288840 ~ 73318587 (+) True LOC110491163
XM_036947761.1 mRNA upstream 105042 73258142 ~ 73280340 (+) True LOC110492610
XM_036945802.1 mRNA upstream 183049 73201944 ~ 73202333 (+) True LOC118939466
XM_036947760.1 mRNA upstream 272392 73102811 ~ 73112990 (+) True LOC110492608
XM_036947764.1 mRNA downstream 8762 73394494 ~ 73660890 (+) False LOC110491178
XM_036947765.1 mRNA downstream 8762 73394494 ~ 73660890 (+) False LOC110491178
XM_036947769.1 mRNA downstream 8762 73394494 ~ 73660890 (+) False LOC110491178
XM_036947770.1 mRNA downstream 8762 73394494 ~ 73660890 (+) False LOC110491178
XM_036947771.1 mRNA downstream 8762 73394494 ~ 73660890 (+) False LOC110491178
TU1607891 other upstream 455663 72911983 ~ 72929719 (+) True G1407566
TU1607712 other upstream 501856 72825521 ~ 72883526 (+) True LOC110491159
TU1607846 other upstream 568659 72808730 ~ 72816723 (+) True LOC110492598
TU1607815 other upstream 616164 72765902 ~ 72769218 (+) True G1407509
TU1607753 other upstream 740518 72641983 ~ 72644864 (+) True ngrn
TU1608614 other downstream 40015 73425747 ~ 73426266 (+) True G1408176
TU1608529 other downstream 274763 73660495 ~ 73662832 (+) False LOC110491178
TU1608530 other downstream 274763 73660495 ~ 73662832 (+) True LOC110491178
TU1608792 other downstream 384114 73769846 ~ 73772566 (+) False G1408313
TU1608784 other downstream 384427 73770159 ~ 73772566 (+) False G1408313

Expression Profile