RNA id: TU1609845


Basic Information

Item Value
RNA id TU1609845
length 481
lncRNA type intronic
GC content 0.47
exon number 2
gene id G1409173
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 74309152 ~ 74311291 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtccttgtacctagcatcgagcatggtggagacacagtaaagaggctcagagagaatgcctgttaaagaagtagcggtccttgtacctagcatcgagcatggtggcgacacagtaaagaggctcagagagaatgcctgttaaagaagtagcggtccttgtacctagcatggagcatggtggagacacagtaaagaggctcagagagaatgcctgttaaagaagtagcagtccttgtacctagcatcaagcatggtggagacacagtaaagagagaatgcctgttaaataagtagcagtccttgtacctagcatctagcatggtggcaacacagtaaagaggctcagagagaatgcctgttaaagaagtagtggTCCTTGTACCTAACATTGAGCATGGTGGcaacacagtaaagagagaatgcctgttaaagaagtagcagtccttgtacctagcatcgagcatggtggtgacacagtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1609843 lncRNA downstream 798 74307711 ~ 74308354 (-) True G1409172
TU1609831 lncRNA downstream 8761 74299542 ~ 74300391 (-) True G1409166
TU1609817 lncRNA downstream 49744 74258809 ~ 74259408 (-) True G1409153
TU1609813 lncRNA downstream 54942 74253338 ~ 74254210 (-) False G1409150
TU1609814 lncRNA downstream 54942 74253742 ~ 74254210 (-) True G1409150
TU1609848 lncRNA upstream 2384 74313675 ~ 74313958 (-) True G1409176
TU1609850 lncRNA upstream 11727 74323018 ~ 74326443 (-) True G1409177
TU1609910 lncRNA upstream 128044 74439335 ~ 74439623 (-) True G1409228
TU1609912 lncRNA upstream 133341 74444632 ~ 74444855 (-) True G1409230
TU1609914 lncRNA upstream 136713 74448004 ~ 74448233 (-) True G1409232
XR_005036627.1 mRNA downstream 91886 74214528 ~ 74217266 (-) True LOC118939594
XR_005036626.1 mRNA downstream 111372 74183180 ~ 74197780 (-) True LOC118939593
XM_036947798.1 mRNA downstream 126513 74172959 ~ 74182639 (-) False rps21
XM_036947797.1 mRNA downstream 153254 73879188 ~ 74155898 (-) True lama5
XM_036947796.1 mRNA downstream 441574 73832868 ~ 73867578 (-) True LOC110492453
XM_036945803.1 mRNA upstream 27964 74339255 ~ 74374071 (-) True ccm2l
XM_036947800.1 mRNA upstream 76649 74387940 ~ 74450972 (-) True LOC110518683
XM_036945804.1 mRNA upstream 346507 74657798 ~ 74757404 (-) True LOC110512152
XM_036945805.1 mRNA upstream 589196 74900487 ~ 74905798 (-) False LOC118939467
XM_036947804.1 mRNA upstream 613472 74924763 ~ 74983786 (-) False LOC110492703
TU1609691 other downstream 113201 74195525 ~ 74195951 (-) True G1409044
TU1609671 other downstream 126572 74172873 ~ 74182580 (-) True rps21
TU1609395 other downstream 531795 73770150 ~ 73777357 (-) False ppdpfb
TU1610173 other upstream 425142 74736433 ~ 74739189 (-) False G1409407
TU1610178 other upstream 425142 74736433 ~ 74739189 (-) False G1409407
TU1610196 other upstream 425142 74736433 ~ 74739189 (-) False G1409407
TU1610200 other upstream 425142 74736433 ~ 74739189 (-) False G1409407
TU1610207 other upstream 425142 74736433 ~ 74739189 (-) False G1409407

Expression Profile