RNA id: TU1609850


Basic Information

Item Value
RNA id TU1609850
length 504
lncRNA type intronic
GC content 0.38
exon number 2
gene id G1409177
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 74323018 ~ 74326443 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttaacagaacattatggtgatgtatcttaacagaacattatggtgatgtatcttaacagaacattatggtgatgtatcttaacagaacattatggtgatgtatcttaacagaacattatagtgatgtatcttaacagaacattatggtgatgtatcttaacagaacattatggtgatgttgtaacggttttcttcgtgagaaggagagtcggaccaaaatgcagcgtgtcgattgcgattcatgtttaatgaaaaaacgtaaaacacgaatcagtacaaaaacaataaacgtaacgaaaacctaaacagcctatctggtgaaaacacatagacaggaacaatcacccacaaacaaacagtgaaacccaggctacctaaatatggttcccaatcagagacaatgactaacacctgcctctgattgagaaccatatcaggccagacatagaaatagacaaacaagacatccaacatagaatgcccacccagatcacaccctgacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1609848 lncRNA downstream 9060 74313675 ~ 74313958 (-) True G1409176
TU1609845 lncRNA downstream 11727 74309152 ~ 74311291 (-) True G1409173
TU1609843 lncRNA downstream 14664 74307711 ~ 74308354 (-) True G1409172
TU1609831 lncRNA downstream 22627 74299542 ~ 74300391 (-) True G1409166
TU1609817 lncRNA downstream 63610 74258809 ~ 74259408 (-) True G1409153
TU1609910 lncRNA upstream 112892 74439335 ~ 74439623 (-) True G1409228
TU1609912 lncRNA upstream 118189 74444632 ~ 74444855 (-) True G1409230
TU1609914 lncRNA upstream 121561 74448004 ~ 74448233 (-) True G1409232
TU1609915 lncRNA upstream 121813 74448256 ~ 74448499 (-) True G1409233
TU1609944 lncRNA upstream 185739 74512182 ~ 74512475 (-) True G1409255
XR_005036627.1 mRNA downstream 105752 74214528 ~ 74217266 (-) True LOC118939594
XR_005036626.1 mRNA downstream 125238 74183180 ~ 74197780 (-) True LOC118939593
XM_036947798.1 mRNA downstream 140379 74172959 ~ 74182639 (-) False rps21
XM_036947797.1 mRNA downstream 167120 73879188 ~ 74155898 (-) True lama5
XM_036947796.1 mRNA downstream 455440 73832868 ~ 73867578 (-) True LOC110492453
XM_036945803.1 mRNA upstream 12812 74339255 ~ 74374071 (-) True ccm2l
XM_036947800.1 mRNA upstream 61497 74387940 ~ 74450972 (-) True LOC110518683
XM_036945804.1 mRNA upstream 331355 74657798 ~ 74757404 (-) True LOC110512152
XM_036945805.1 mRNA upstream 574044 74900487 ~ 74905798 (-) False LOC118939467
XM_036947804.1 mRNA upstream 598320 74924763 ~ 74983786 (-) False LOC110492703
TU1609691 other downstream 127067 74195525 ~ 74195951 (-) True G1409044
TU1609671 other downstream 140438 74172873 ~ 74182580 (-) True rps21
TU1609395 other downstream 545661 73770150 ~ 73777357 (-) False ppdpfb
TU1610173 other upstream 409990 74736433 ~ 74739189 (-) False G1409407
TU1610178 other upstream 409990 74736433 ~ 74739189 (-) False G1409407
TU1610196 other upstream 409990 74736433 ~ 74739189 (-) False G1409407
TU1610200 other upstream 409990 74736433 ~ 74739189 (-) False G1409407
TU1610207 other upstream 409990 74736433 ~ 74739189 (-) False G1409407

Expression Profile