RNA id: TU1609965


Basic Information

Item Value
RNA id TU1609965
length 548
lncRNA type inter_gene
GC content 0.33
exon number 3
gene id G1409273
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 74514395 ~ 74584144 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcatttggaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaattcaagcttgtgatctaaaatatgcagctggttacccaacattttttgggatgtttttttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgttttaatgggcaggtaccatcacgaatttgtcatgctcaaaattttttagatgtatttttttttgtttcttactttttcaaagtcactgtgcatttggaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaacgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttggaatatgttttaatgggcagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1609972 lncRNA downstream 60004 74521732 ~ 74522434 (-) True G1409277
TU1609944 lncRNA downstream 69963 74512182 ~ 74512475 (-) True G1409255
TU1609915 lncRNA downstream 133939 74448256 ~ 74448499 (-) True G1409233
TU1609914 lncRNA downstream 134205 74448004 ~ 74448233 (-) True G1409232
TU1609912 lncRNA downstream 137583 74444632 ~ 74444855 (-) True G1409230
TU1609983 lncRNA upstream 8073 74592217 ~ 74596111 (-) True G1409287
TU1609992 lncRNA upstream 16567 74600711 ~ 74601209 (-) True G1409293
TU1609994 lncRNA upstream 51902 74636046 ~ 74636305 (-) True G1409295
TU1610150 lncRNA upstream 122457 74706601 ~ 74708680 (-) False G1409397
TU1610151 lncRNA upstream 123556 74707700 ~ 74708680 (-) True G1409397
XM_036947800.1 mRNA downstream 131466 74387940 ~ 74450972 (-) True LOC110518683
XM_036945803.1 mRNA downstream 208367 74339255 ~ 74374071 (-) True ccm2l
XM_036947799.1 mRNA downstream 251329 74217320 ~ 74331109 (-) True LOC110510377
XR_005036627.1 mRNA downstream 365172 74214528 ~ 74217266 (-) True LOC118939594
XR_005036626.1 mRNA downstream 384658 74183180 ~ 74197780 (-) True LOC118939593
XM_036945804.1 mRNA upstream 73654 74657798 ~ 74757404 (-) True LOC110512152
XM_036945805.1 mRNA upstream 316343 74900487 ~ 74905798 (-) False LOC118939467
XM_036947804.1 mRNA upstream 340619 74924763 ~ 74983786 (-) False LOC110492703
XM_036947805.1 mRNA upstream 340619 74924763 ~ 74983786 (-) False LOC110492703
XM_036947806.1 mRNA upstream 340619 74924763 ~ 74983786 (-) False LOC110492703
TU1609691 other downstream 386487 74195525 ~ 74195951 (-) True G1409044
TU1609671 other downstream 399858 74172873 ~ 74182580 (-) True rps21
TU1609395 other downstream 805081 73770150 ~ 73777357 (-) False ppdpfb
TU1610173 other upstream 152289 74736433 ~ 74739189 (-) False G1409407
TU1610178 other upstream 152289 74736433 ~ 74739189 (-) False G1409407
TU1610196 other upstream 152289 74736433 ~ 74739189 (-) False G1409407
TU1610200 other upstream 152289 74736433 ~ 74739189 (-) False G1409407
TU1610207 other upstream 152289 74736433 ~ 74739189 (-) False G1409407

Expression Profile