RNA id: TU1609992


Basic Information

Item Value
RNA id TU1609992
length 499
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1409293
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 74600711 ~ 74601209 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggacactcccaccagatggcatacggaatcatatggcaatttggcaaaacatcacgaatcgcgacggggccttatctcaaaaactgaaaatatttcgaagccgaaacttggcgagcgtaggtttggctcaaggggcagttggccccgaacgggatggcgtctaggcctcgacggtttttgagctacggccatttttctgggattaaaggcttaaaatggaagtagagaaattatttttccacttccggtcaaagccaaggagcctccggtgtcaataaaaaaagaaccagccatttatctatcgtcatttaagagaaacggaacaatgacaaattggtgatggtcacaaataggcgtttttttttttcaacggttacagatccagttgcagggtgttcatacgaatctttttaaagtgtgctgcggagctctgcgacatttctgtgattttctatgattttctgaaataacacaataaccgaccattagaatagtaggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1609983 lncRNA downstream 4600 74592217 ~ 74596111 (-) True G1409287
TU1609975 lncRNA downstream 5722 74562923 ~ 74594989 (-) True G1409279
TU1609965 lncRNA downstream 16567 74582438 ~ 74584144 (-) True G1409273
TU1609967 lncRNA downstream 17113 74514395 ~ 74583598 (-) False G1409273
TU1609972 lncRNA downstream 78277 74521732 ~ 74522434 (-) True G1409277
TU1609994 lncRNA upstream 34837 74636046 ~ 74636305 (-) True G1409295
TU1610150 lncRNA upstream 105392 74706601 ~ 74708680 (-) False G1409397
TU1610151 lncRNA upstream 106491 74707700 ~ 74708680 (-) True G1409397
TU1610155 lncRNA upstream 117544 74718753 ~ 74719203 (-) True G1409401
TU1610158 lncRNA upstream 122439 74723648 ~ 74724176 (-) True G1409403
XM_036947800.1 mRNA downstream 149739 74387940 ~ 74450972 (-) True LOC110518683
XM_036945803.1 mRNA downstream 226640 74339255 ~ 74374071 (-) True ccm2l
XM_036947799.1 mRNA downstream 269602 74217320 ~ 74331109 (-) True LOC110510377
XR_005036627.1 mRNA downstream 383445 74214528 ~ 74217266 (-) True LOC118939594
XR_005036626.1 mRNA downstream 402931 74183180 ~ 74197780 (-) True LOC118939593
XM_036945804.1 mRNA upstream 56589 74657798 ~ 74757404 (-) True LOC110512152
XM_036945805.1 mRNA upstream 299278 74900487 ~ 74905798 (-) False LOC118939467
XM_036947804.1 mRNA upstream 323554 74924763 ~ 74983786 (-) False LOC110492703
XM_036947805.1 mRNA upstream 323554 74924763 ~ 74983786 (-) False LOC110492703
XM_036947806.1 mRNA upstream 323554 74924763 ~ 74983786 (-) False LOC110492703
TU1609691 other downstream 404760 74195525 ~ 74195951 (-) True G1409044
TU1609671 other downstream 418131 74172873 ~ 74182580 (-) True rps21
TU1609395 other downstream 823354 73770150 ~ 73777357 (-) False ppdpfb
TU1610173 other upstream 135224 74736433 ~ 74739189 (-) False G1409407
TU1610178 other upstream 135224 74736433 ~ 74739189 (-) False G1409407
TU1610196 other upstream 135224 74736433 ~ 74739189 (-) False G1409407
TU1610200 other upstream 135224 74736433 ~ 74739189 (-) False G1409407
TU1610207 other upstream 135224 74736433 ~ 74739189 (-) False G1409407

Expression Profile