RNA id: TU1610178


Basic Information

Item Value
RNA id TU1610178
length 1237
RNA type TUCP
GC content 0.38
exon number 5
gene id G1409407
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 74736433 ~ 74739189 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttttttcttgtagtttatttgaggttttaaaaggcttctcaagtttgtaatttccactttccAGACTAGATGTTCCCTTATGAAAATGTGTCATCCATACACAACTGTCCGTTTTTTATAATTCACATTTTAATTCTAATGTCCTGTTGCTCCGGGATTATTTTCTTCCTGCTGTTGCAAACTGGCTCAATTTAAGATCCTACATGTGTAGTGATGTAGCTGTATGGGTGGTAAAGCTGACCCAGCAGTAAACTACACACTTCATTAACAACAGGATTCTCCGAGCAGACTCCTCTGATGGGATGTGTTTATTAGTTGGCTGACAGCCATTTCTTCCTAGCTGGCCTCTACATTCCATTAAAGAGGAAACTCTGCAGTTCAGACAATAACAAagcagcaccccatcactcattTGGTAAATATCCGCGTTTGTTTACAAATTCATATATATTTCTTTACAAACAAAGGGGGTAAACAAGCTTGTATTTTGGGTTTTGATAAAGTTATGAAAATAAGATCATGGgagatttttttaaaattataatcaTCTAGTTTTAGTGGGTATATATCATAAATATGAAAGTCCTAAAATTGATGTCTTAATCACAGATTGACCATTTAATGAAATGTGTGTGACAACTGTCCTgttctactgtcctgtactactgtcctgtactactgtcctgtactactgtcctgtactactgtcctgtactactgtactactgtcctgtactactgtcctgtactactgtactgtactactgtcctgtactactgtcctgtactgctgtcctgtactactgtactactgtcctgtactactgtactactgtcctgtactactgtcctgtactactgtcctgtactactgtactactgtcctgtactactgtactactgtcctgtactactgtcctgtactgctgtcctgtactactgtactactgtcctgtactactgtcctgtactactgtactactgtcctgtactactgtcctgtactactgtactactgtcctgtactactgtcctgtactactgtcctgtactactgtcctgtacacatgtcctctactgtatgcttattgttattgtccAACGTTTGGTTATTTTTTACCCCTGGTTATTGTTGTTGCTGGTGTCCCGGTGACAATgttgattcttattattttcatattgtaaatatccaaaataatcTTTGGCAAAATGTACATTGTtgcgtcatgccaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1610158 lncRNA downstream 12257 74723648 ~ 74724176 (-) True G1409403
TU1610155 lncRNA downstream 17230 74718753 ~ 74719203 (-) True G1409401
TU1610150 lncRNA downstream 27753 74706601 ~ 74708680 (-) False G1409397
TU1610151 lncRNA downstream 27753 74707700 ~ 74708680 (-) True G1409397
TU1609994 lncRNA downstream 100128 74636046 ~ 74636305 (-) True G1409295
TU1610214 lncRNA upstream 171 74739360 ~ 74739876 (-) True G1409408
TU1610242 lncRNA upstream 21762 74760951 ~ 74761346 (-) True G1409419
TU1610243 lncRNA upstream 23421 74762610 ~ 74770849 (-) False G1409420
TU1610244 lncRNA upstream 27200 74766389 ~ 74770849 (-) True G1409420
TU1610245 lncRNA upstream 28933 74768122 ~ 74770138 (-) True G1409421
XM_036947800.1 mRNA downstream 285461 74387940 ~ 74450972 (-) True LOC110518683
XM_036945803.1 mRNA downstream 362362 74339255 ~ 74374071 (-) True ccm2l
XM_036947799.1 mRNA downstream 405324 74217320 ~ 74331109 (-) True LOC110510377
XR_005036627.1 mRNA downstream 519167 74214528 ~ 74217266 (-) True LOC118939594
XR_005036626.1 mRNA downstream 538653 74183180 ~ 74197780 (-) True LOC118939593
XM_036945805.1 mRNA upstream 161298 74900487 ~ 74905798 (-) False LOC118939467
XM_036947804.1 mRNA upstream 185574 74924763 ~ 74983786 (-) False LOC110492703
XM_036947805.1 mRNA upstream 185574 74924763 ~ 74983786 (-) False LOC110492703
XM_036947806.1 mRNA upstream 185574 74924763 ~ 74983786 (-) False LOC110492703
XM_036947803.1 mRNA upstream 185574 74924763 ~ 74984835 (-) False LOC110492703
TU1609691 other downstream 540482 74195525 ~ 74195951 (-) True G1409044
TU1609671 other downstream 553853 74172873 ~ 74182580 (-) True rps21
TU1609395 other downstream 959076 73770150 ~ 73777357 (-) False ppdpfb
TU1610267 other upstream 105915 74845104 ~ 74847937 (-) False G1409430
TU1610270 other upstream 105915 74845104 ~ 74847937 (-) False G1409430
TU1610805 other upstream 629701 75368890 ~ 75369623 (-) True G1409847
TU1610916 other upstream 695865 75435054 ~ 75435540 (-) True G1409928
TU1611228 other upstream 1016589 75755778 ~ 75756479 (-) True G1410190

Expression Profile