RNA id: TU1610242


Basic Information

Item Value
RNA id TU1610242
length 396
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1409419
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 74760951 ~ 74761346 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tactatcactagtcaataatacacggTGCTACcctatcactagtcaataatacacggTGCTACcctatcactagtcaataatacacggTGCTACcctatcactagtcaataatacacggtgttatactatcactagtcaataatatACGGTGCTAtactatcactagtcaataatacacggtgttatactatcactagtcaataatacacggTGCTACcctatcactagtcaataatacacggtgttatactatcactagtcaataatacacggtgctacactatcactagtcaataatacacggtgctacactatcactagtcaataatacacagtgttatactatcactagtcaataatacacagtgctacactatcactagtcaataatacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1610214 lncRNA downstream 21075 74739360 ~ 74739876 (-) True G1409408
TU1610158 lncRNA downstream 36775 74723648 ~ 74724176 (-) True G1409403
TU1610155 lncRNA downstream 41748 74718753 ~ 74719203 (-) True G1409401
TU1610150 lncRNA downstream 52271 74706601 ~ 74708680 (-) False G1409397
TU1610151 lncRNA downstream 52271 74707700 ~ 74708680 (-) True G1409397
TU1610243 lncRNA upstream 1264 74762610 ~ 74770849 (-) False G1409420
TU1610244 lncRNA upstream 5043 74766389 ~ 74770849 (-) True G1409420
TU1610245 lncRNA upstream 6776 74768122 ~ 74770138 (-) True G1409421
TU1610247 lncRNA upstream 16161 74777507 ~ 74778567 (-) False G1409423
TU1610249 lncRNA upstream 16694 74778040 ~ 74778567 (-) True G1409423
XM_036945804.1 mRNA downstream 3547 74657798 ~ 74757404 (-) True LOC110512152
XM_036947800.1 mRNA downstream 309979 74387940 ~ 74450972 (-) True LOC110518683
XM_036945803.1 mRNA downstream 386880 74339255 ~ 74374071 (-) True ccm2l
XM_036947799.1 mRNA downstream 429842 74217320 ~ 74331109 (-) True LOC110510377
XR_005036627.1 mRNA downstream 543685 74214528 ~ 74217266 (-) True LOC118939594
XM_036945805.1 mRNA upstream 139141 74900487 ~ 74905798 (-) False LOC118939467
XM_036947804.1 mRNA upstream 163417 74924763 ~ 74983786 (-) False LOC110492703
XM_036947805.1 mRNA upstream 163417 74924763 ~ 74983786 (-) False LOC110492703
XM_036947806.1 mRNA upstream 163417 74924763 ~ 74983786 (-) False LOC110492703
XM_036947803.1 mRNA upstream 163417 74924763 ~ 74984835 (-) False LOC110492703
TU1610178 other downstream 21762 74736433 ~ 74739189 (-) False G1409407
TU1610267 other upstream 83758 74845104 ~ 74847937 (-) False G1409430
TU1610270 other upstream 83758 74845104 ~ 74847937 (-) False G1409430
TU1610805 other upstream 607544 75368890 ~ 75369623 (-) True G1409847
TU1610916 other upstream 673708 75435054 ~ 75435540 (-) True G1409928
TU1611228 other upstream 994432 75755778 ~ 75756479 (-) True G1410190

Expression Profile