RNA id: TU1610266


Basic Information

Item Value
RNA id TU1610266
length 2399
lncRNA type antisense_over
GC content 0.47
exon number 3
gene id G1409430
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 74845104 ~ 74847937 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGTTTTCACATAGAATTTTATTACTGTGATCCACTTTTGCGATAAAATATAGTGCACCAGATATGCATTTTTGTACAAGATTTTTAATAGCACAAATTGGCAAAGCCACAACAATAATCGGAAACACAGTTAATCTCCACAAACATAGTAAGTCATGAGATAGACTAAGAGAAGGAAGGCTGGGGGGAGGTggggtgtggagggagggaaggctgGGGGAGGTggggtgtggagggagggaaggctgGGGGGAGGCGGGGTTTCAGAGGGAGGGAAGGTTGGGGGGAGGCGGGGTGTGGAGTTGTCAGTTTCACATCCAGTATACAGTGTCTTTTTCATGGGCAGTACTGTACCTTAACCCACTGGCAAAGCAGAAGTGGGAGAGAAGTACATATGAAGAACGACTATCCGAAACAAGACACAGTAGCAAAGCTAGGATATGTTATTAGAGATGCTGTAGCCATGGTAGCGAGCCAAGAAGAGTTGCCAAAGCAACACAATCAGGATGAGTTAGCGATAACATATATCCATTACCATCAGTTCTGCAGACTTAAGACTGAACCTTTCCTATCGATCACAGAGaaattcacagagagagagagagagagagagtcatctcATTAGCAACCATACCTCAAACAACAAGTGCCATGGTGAGTGTACCGTTGTCTTGACGATTGACAGGCAATGACGCGATACAGCTATTCAACGTGTTGGGTCAGGCGTGACCCTTGTGCATACCTCTTCCTGTCTCTACTGTACAAAACAGAGAGGATAAATCAGAGGAGCCTATCTCTACTGTGCCAAACAGAGAGGATAAATCAGAGGAGCCTATCTCTACTGTGCCAAACAGAGAGGATAAATCAGAGGAGCCTATCTCTACTGTGCCAAACAGAGAGGATAAATCAGAGGAGCCTATCTCTACTGTGCCAAACAGAGAGGATAAATCGGGAAAGGAGCCTATCTCTACTGTGCCAAACAGAGAGGATAAATCGGGAAAGGAGCCTGTCTCTACTGTGCAAAACAGAGAGGATAAATCGGGAAAGGAGCCTAACATCTGCAGCACAACAattaaaatacacattttgaATGAAATCACAACATTTCTTGTCGGAGTGCCTAGTCCGTTTCCGATCTCTTGTCAACTCCTTATAGTTATGCCAAACAGGCTTGACAACACACAAAACAGATATGGGACCTGTTGTTCAACAGTTCTTCTCTGTAAAAAATCTCCCGTGTTTttttccctttcttcttctcagCGCTATACGGTTGTGTGGACTCTGGGTCTGGAAGGAGACCAATAACGAAGCTGTTAGCTGAGTACTGCTGGACTATGAGGTGATTTAAACCGTGGGGATTTACGGTGTGCGAACAGTGATTTACGACCTGTGCGACAGAACATTTAACACCAGATATTTTCACTGCAAATTATATTagaaaaataaatGATATTAGCACTACTGAGCTGCATTATTTCTTATTAGAGGGCCTGCTATAAACCTTTATATTTCACACATTTACGCATCACTATAACCAATTCTTGTCACCGTAGAAACGTAGCCATGTCTGACGCCTGGTGTCGTGGTATTCCACGAATACAACAGGGAAAGATTACTTTGTGTTGTGACACTTCTTATTTGGTCTATTCTATTCTTCACTTTCCAAACAACTCAAGTCAAATAATGATATCAGAACACTTTGATTGAAGCTACATTTTTTATACACTGTTTATGAGCATTAGgttattcatctctctctctctctctctctctctatctctctctctctctctctctctctctctctctctctgtctctctctctctctctctctctctctctctctctctgtctctctctctctctctctctctgtctctctctctctctgtctctccatctgtctccctctccatctctccctctccatctctccctctctactgtgGCAGGTAGTGTAGAATGTGTTGGATTAGCAGCTCGGGGTCATAGGTTATGGGGTCGTAGTTCAGGGCTCGTCTCCTGCGGCTGGGTCTCCCACCAGGCTGGGGCTGCAGTTCGTTGTCGATCCTCTTCATTCTCTGAAGCTCCACCATGTGGTCGGGGGTCCTgtggccctccctctctccccccggcCCACCAGGCCCCTCTACCACCACCCCTTCCATGTCCCCCAGCCTCTTGACCCTCAGCAGCCCCACAGAGTGCTCCCGGTTTAAggaaggggaaggaggggagTCGAGGGAGCGACGGGACCTGTGGAGGACTGGGCTGGAGGAAGCTCGGACCCTTCCACCACCTCCAGACACAGACACCAGGTCTCTCCTTGCCCTGCGGCCTGATGAACCCTGGGGCTTGGTGGGACTGATGTTGGAAAGGACCTTAGATACCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1610283 lncRNA downstream 21325 74823566 ~ 74823779 (-) True G1409441
TU1610247 lncRNA downstream 66537 74777507 ~ 74778567 (-) False G1409423
TU1610249 lncRNA downstream 66537 74778040 ~ 74778567 (-) True G1409423
TU1610244 lncRNA downstream 74255 74766389 ~ 74770849 (-) True G1409420
TU1610292 lncRNA upstream 30140 74878077 ~ 74878695 (-) True G1409450
TU1610299 lncRNA upstream 39873 74887810 ~ 74888030 (-) True G1409457
TU1610311 lncRNA upstream 48566 74896503 ~ 74896983 (-) True G1409469
TU1610672 lncRNA upstream 55202 74903139 ~ 74903468 (-) True LOC118939467
TU1610673 lncRNA upstream 55809 74903746 ~ 74903971 (-) True G1409742
XM_036945804.1 mRNA downstream 87700 74657798 ~ 74757404 (-) True LOC110512152
XM_036947800.1 mRNA downstream 394132 74387940 ~ 74450972 (-) True LOC110518683
XM_036945803.1 mRNA downstream 471033 74339255 ~ 74374071 (-) True ccm2l
XM_036947799.1 mRNA downstream 513995 74217320 ~ 74331109 (-) True LOC110510377
XR_005036627.1 mRNA downstream 627838 74214528 ~ 74217266 (-) True LOC118939594
XM_036945805.1 mRNA upstream 52550 74900487 ~ 74905798 (-) False LOC118939467
XM_036947804.1 mRNA upstream 76826 74924763 ~ 74983786 (-) False LOC110492703
XM_036947805.1 mRNA upstream 76826 74924763 ~ 74983786 (-) False LOC110492703
XM_036947806.1 mRNA upstream 76826 74924763 ~ 74983786 (-) False LOC110492703
XM_036947803.1 mRNA upstream 76826 74924763 ~ 74984835 (-) False LOC110492703
TU1610178 other downstream 105915 74736433 ~ 74739189 (-) False G1409407
TU1610805 other upstream 520953 75368890 ~ 75369623 (-) True G1409847
TU1610916 other upstream 587117 75435054 ~ 75435540 (-) True G1409928
TU1611228 other upstream 907841 75755778 ~ 75756479 (-) True G1410190
TU1611257 other upstream 1015892 75863829 ~ 75864456 (-) False G1410213
TU1611355 other upstream 1092770 75940707 ~ 75941802 (-) False G1410288

Expression Profile