RNA id: TCONS_00047110


Basic Information

Item Value
RNA id TCONS_00047110
length 734
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id XLOC_023202
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 42075975 ~ 42076966 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATCATtaccatcatcttcatcattacCATCAACGTCATCATtaccatcatcttcatcattaccatcatcatcattaccatcaccGTCATCATTACATCAACATCATCATtaccatcATCATCATTACCATCAACGTCATCATTACATCAACGTCATTATTACCATCATCTTTATCATCACCATCTACATCATTACTATCACATCATAATAATCATTACATCATCTTCATCCTTGTCATTAGTACATCATTACCATCACCAAAATCATAATCCTCACCATTACATCATCATCGTCATTATTAGCTCACCATCACCTTACTCATTCGCATCAGTGAGTGCAGTAGTTCTAGTTAGTAGACTGACCCTGTATCTCTGCAATCTCTCCGACCCATGAGTTGCTGAGGAGCCCGAGTCCCGGCACAGACGAGGTGCCCAGAATCACCTGCCCTAAGAAGACAGCATCAGCCGGCACCCGCGTGGGGTGAAAGGTCGACTCTAGAGCCTTCTTCTGGCAGGACAGACGCGAGTAATCGATCTCATACAGCACACCCTGAAGACagaggaaaaaacaaacacacacacacacacacctacacgtCACTACCGGCACTGATGTTCACTAACAGCAGACGTTATCAGCTAATGGAGGCTTCATATCACACAGTACTGACAGAGGAGCTGATGCAGCGTTCTTAGGGAAACACAATGCCCCGTTAAGGagatttgaatgtgtg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047109 lncRNA upstream 88643 41982127 ~ 41987332 (+) True XLOC_023198
TCONS_00047108 lncRNA upstream 285436 41786545 ~ 41790539 (+) True XLOC_023196
TCONS_00046833 lncRNA upstream 631256 41402545 ~ 41444719 (+) False XLOC_023190
TCONS_00046835 lncRNA upstream 631256 41440080 ~ 41444719 (+) True XLOC_023190
TCONS_00046834 lncRNA upstream 640490 41433515 ~ 41435485 (+) True XLOC_023191
TCONS_00047119 lncRNA downstream 14241 42091207 ~ 42093362 (+) True XLOC_023203
TCONS_00047120 lncRNA downstream 45570 42122536 ~ 42123841 (+) False XLOC_023206
TCONS_00047121 lncRNA downstream 45681 42122647 ~ 42123841 (+) False XLOC_023206
TCONS_00046836 lncRNA downstream 45705 42122671 ~ 42123841 (+) True XLOC_023206
TCONS_00047122 lncRNA downstream 47155 42124121 ~ 42125758 (+) True XLOC_023207
TCONS_00045928 mRNA upstream 488 42074143 ~ 42075487 (+) True XLOC_023201
TCONS_00045927 mRNA upstream 57732 42004640 ~ 42018243 (+) True XLOC_023200
TCONS_00045926 mRNA upstream 81299 41989108 ~ 41994676 (+) True XLOC_023199
TCONS_00045924 mRNA upstream 89080 41931585 ~ 41986895 (+) False XLOC_023198
TCONS_00045925 mRNA upstream 89378 41940299 ~ 41986597 (+) False XLOC_023198
TCONS_00045929 mRNA downstream 17867 42094833 ~ 42101600 (+) True XLOC_023204
TCONS_00045930 mRNA downstream 40265 42117231 ~ 42121054 (+) True XLOC_023205
TCONS_00045933 mRNA downstream 51017 42127983 ~ 42140381 (+) False XLOC_023208
TCONS_00045932 mRNA downstream 51017 42127983 ~ 42140381 (+) False XLOC_023208
TCONS_00045931 mRNA downstream 51017 42127983 ~ 42140381 (+) False XLOC_023208
TCONS_00045922 other upstream 365171 41710688 ~ 41710804 (+) True XLOC_023195
TCONS_00045919 other upstream 538784 41537062 ~ 41537191 (+) True XLOC_023192
TCONS_00045913 other upstream 1427603 40648256 ~ 40648372 (+) True XLOC_023180
TCONS_00045904 other upstream 2288411 39787473 ~ 39787564 (+) True XLOC_023169
TCONS_00045896 other upstream 2428904 39638589 ~ 39647071 (+) False XLOC_023163