RNA id: TU1610684


Basic Information

Item Value
RNA id TU1610684
length 708
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G1409752
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 75017613 ~ 75024741 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATACAAGGGTCTGACTCAGTCTTCAGTAATATGTCTCCCCTGGTCCAGAAACCTGGAGGTGGAGGCTAGAGGAGGATGTGGGTCAGTCCGTTACACCAGTTTGAAGGCAAAATATGCACTTTTCATTTTCCAGTTTTAATATTTAATGAAGCAGAAATTGGATATAGTAAATATCAAAAGTAGGATGAAAAAACAAATTGGTTACTTtcagtgcgttcggaaagtattcagaccccttgactttttccacattttgttactttacagccttattctaaaatggattaaatagtttttgcccctcatcaatctacacacaataccccataatgttgtcacaataccccataatgacatcgcaataccccataatgatgttacaataccccataatgatgttacaataccccataatgatgttacaataccccataatgatgttacaataccccataatgacatcacaataccccataatgatgtcacaataccccataatgatgtcacaataccccataatgatgttacaataccccataatgacatcacaataccccataatgatgtcacaataccccataatgatgtcacaataccccataatgatgttacaataccccataatgatgttacaataccccataatgacatcacaataccccataatgatgtcacaataccccataatgacatcacaataccccataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1610717 lncRNA downstream 22352 74994846 ~ 74995261 (-) False G1409772
TU1610718 lncRNA downstream 22352 74994846 ~ 74995261 (-) True G1409772
TU1610713 lncRNA downstream 43679 74971324 ~ 74973934 (-) True G1409768
TU1610714 lncRNA downstream 44047 74973095 ~ 74973566 (-) True G1409769
TU1610703 lncRNA downstream 89599 74924678 ~ 74928014 (-) True LOC110492703
TU1610742 lncRNA upstream 37447 75062188 ~ 75062682 (-) False G1409794
TU1610743 lncRNA upstream 37447 75062188 ~ 75062682 (-) True G1409794
TU1610758 lncRNA upstream 64386 75089127 ~ 75090666 (-) True G1409806
TU1610768 lncRNA upstream 90992 75115733 ~ 75115957 (-) True G1409816
TU1610775 lncRNA upstream 111394 75136135 ~ 75136489 (-) True G1409823
XM_036947807.1 mRNA downstream 2234 74986625 ~ 75015379 (-) False irak1
XM_036947808.1 mRNA downstream 2234 74986625 ~ 75015379 (-) False irak1
XM_036947809.1 mRNA downstream 2234 74986625 ~ 75015379 (-) True irak1
XM_036947803.1 mRNA downstream 32778 74924763 ~ 74984835 (-) False LOC110492703
XM_036947804.1 mRNA downstream 33827 74924763 ~ 74983786 (-) False LOC110492703
XM_021564530.2 mRNA upstream 4866 75029607 ~ 75046973 (-) True LOC110491183
XM_036945806.1 mRNA upstream 346879 75371620 ~ 75372905 (-) True LOC118939468
XR_005036630.1 mRNA upstream 575293 75600034 ~ 75615100 (-) False LOC110492917
XM_036947815.1 mRNA upstream 575293 75600034 ~ 75615122 (-) True LOC110492917
XM_036947820.1 mRNA upstream 1079468 76104209 ~ 76119590 (-) False LOC110492699
TU1610267 other downstream 169676 74845104 ~ 74847937 (-) False G1409430
TU1610270 other downstream 169676 74845104 ~ 74847937 (-) False G1409430
TU1610200 other downstream 278424 74736433 ~ 74739189 (-) False G1409407
TU1610805 other upstream 344149 75368890 ~ 75369623 (-) True G1409847
TU1610916 other upstream 410313 75435054 ~ 75435540 (-) True G1409928
TU1611228 other upstream 731037 75755778 ~ 75756479 (-) True G1410190
TU1611257 other upstream 839088 75863829 ~ 75864456 (-) False G1410213
TU1611355 other upstream 915966 75940707 ~ 75941802 (-) False G1410288

Expression Profile