RNA id: TU1610916


Basic Information

Item Value
RNA id TU1610916
length 487
RNA type TUCP
GC content 0.35
exon number 1
gene id G1409928
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 75435054 ~ 75435540 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatgatggatgtaatctactcctccattaggatgatagatgtaatctacaggatgatagatgtaatctactcctccattaggatgatagatgtaatctacaggatgatagatgtaatctactcctccattaggatgatatatgtaatctactcctccattaggatgatagatgtaatctactcctccattaggatgatagatgtaatctactcctccattaggatgatagatgtaatctacaggatgatagatgtaatctacaggatgatagatgtaatctacatctccttcaggatgatagatgtaatctactcctccattaggatgatagatgtaatctacaggatgatggATGTATTCtataggatgatagatgtaatctactcctccattaggatgatagatgtaatctacaggatgatggATGTATTCTATAggatgatggatgtaatctactcctccattagtaTGACATATGTAATctac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1610915 lncRNA downstream 2 75434775 ~ 75435052 (-) True G1409927
TU1610903 lncRNA downstream 15397 75419455 ~ 75419657 (-) True G1409915
TU1610901 lncRNA downstream 17997 75416787 ~ 75417057 (-) True G1409913
TU1610893 lncRNA downstream 29100 75405681 ~ 75405954 (-) True G1409905
TU1610885 lncRNA downstream 51644 75382985 ~ 75383410 (-) True G1409897
TU1610918 lncRNA upstream 4249 75439789 ~ 75440007 (-) True G1409930
TU1610920 lncRNA upstream 10692 75446232 ~ 75446433 (-) True G1409932
TU1610926 lncRNA upstream 21382 75456922 ~ 75457141 (-) True G1409938
TU1610930 lncRNA upstream 27489 75463029 ~ 75463280 (-) True G1409942
TU1610940 lncRNA upstream 46505 75482045 ~ 75483658 (-) False G1409951
XM_036945806.1 mRNA downstream 62149 75371620 ~ 75372905 (-) True LOC118939468
XM_021564530.2 mRNA downstream 388081 75029607 ~ 75046973 (-) True LOC110491183
XM_036947807.1 mRNA downstream 419675 74986625 ~ 75015379 (-) False irak1
XM_036947808.1 mRNA downstream 419675 74986625 ~ 75015379 (-) False irak1
XM_036947809.1 mRNA downstream 419675 74986625 ~ 75015379 (-) True irak1
XR_005036630.1 mRNA upstream 164494 75600034 ~ 75615100 (-) False LOC110492917
XM_036947815.1 mRNA upstream 164494 75600034 ~ 75615122 (-) True LOC110492917
XM_036947820.1 mRNA upstream 668669 76104209 ~ 76119590 (-) False LOC110492699
XM_036947827.1 mRNA upstream 1125717 76561257 ~ 76637349 (-) False LOC110492709
XM_036947824.1 mRNA upstream 1125717 76561257 ~ 76642094 (-) False LOC110492709
TU1610805 other downstream 65431 75368890 ~ 75369623 (-) True G1409847
TU1610267 other downstream 587117 74845104 ~ 74847937 (-) False G1409430
TU1610270 other downstream 587117 74845104 ~ 74847937 (-) False G1409430
TU1610200 other downstream 695865 74736433 ~ 74739189 (-) False G1409407
TU1611228 other upstream 320238 75755778 ~ 75756479 (-) True G1410190
TU1611257 other upstream 428289 75863829 ~ 75864456 (-) False G1410213
TU1611355 other upstream 505167 75940707 ~ 75941802 (-) False G1410288
TU1611577 other upstream 625529 76061069 ~ 76061732 (-) True G1410456
TU1611591 other upstream 668707 76104247 ~ 76111098 (-) True LOC110492699

Expression Profile