RNA id: TU1611044


Basic Information

Item Value
RNA id TU1611044
length 1701
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1410038
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 75592320 ~ 75594020 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaaaactgcattgttggttaagggcttgtaagtaagcatttcactgtaagggtctacacttgttgtattcggcgcactatttttcttaatttgttttgagTTAACATGACATTGTAACATTCTATGGTACCCATGTTAGCATTTCCATTAACACAACGTGGGAATAGAATACATTTTATATTATTTAAATCATGTTATGTAACTGAATGTCTAGCCTGGTTGGCAGTTTTTTTTTagataacattccactccttgtcattGAGTAGGcctacaaggagtggaatgttttCTGAACAGACTGGCAACCAGGCTGGTCTACTGAATGTCTAGAGTTGGCTCAACTCACTAAATACACTATATGACTCTGGAGATATCTAGGTTAGCACAATGTATCATTGGACatgattgtttattttatttttttataagaaATCATTTAGCTTACTGAACAGTGACTGCCTGGTaacatttatactgaacaaaaatataaacgcaacatgtaaagtgttggtcacatgtttcatgagctgaaattaaagatcccagaaatgttccattatgcacaaaaagcttatttctctcatttgtttgcatccctgttagtgagcatttctgctttgccaagataatccatctacctgacaggtgtggcatatcaagaagctgattaaacctcatgatcattacacaggtgcaccttgtgctgtgaacaataaaaggccactctaaaatgtgcagttttgtcacgcaacacaatgccacagatgtctcaagatttgagagagtgtgtaattggcatgctgaatgcaggaatgtccaccagagctgttgccagataatttaatgttcatttctctaccataagctgcttccaacgttgttttagagaatttgtcagtacgtcaaACCAGACTCACAACCCCGtgaaaccacaccagcccaggacctccacatctggcttctaaACGTGCagaatcgtctgagaccagccacctggacaccTGTCGACCAGACACCTGGACACCTGACGACCAGACACCTGGACACCTGACGACCAGACACCTGGACAACTGTCGACCAGACACCTGGACACCTGACGACCAGACACCTGGACACCTGACGACCAGACACCTGGACACCTGACGACCAAACACCTGGACACCTGatgaccagccacctggacaccTGTCGACCAGACACCTGGACACCTGACGACCAGACACCTGataaaactgaggagtatttatatCTGTAAAAAAGCCCTTTTTGTGCGGAAAACttgttctgattggctgggcctcgCTCCCCCTATGCGTAAACGGGGTCTTCGGATTGTGAGTCTGGTttgacgtactgacaaattctctaaaacgacgtcggaagctgcttatggtagagaaatgaacattcaacggctgcgcccctgcccagctacgtgaaatctatagattagggcctaatgaatttattataaaattgactgatttccttctatgaactggaACCTCATTAAAGTCGTTGAAactgttacatgttgcgtttatatttttggttctgtcacgtcctgaccttagttcctttattatgtctttgtgttagtttggtcagggcgtgagttgtggtgggtagtctatgttattttttctatgttgtatttctgtgtttggcctggtatggttctcaatcagaggcagctgtcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1610997 lncRNA downstream 9080 75582788 ~ 75583240 (-) True G1410002
TU1610996 lncRNA downstream 10805 75581189 ~ 75581515 (-) True G1410001
TU1610994 lncRNA downstream 15468 75576592 ~ 75576852 (-) True G1409999
TU1610965 lncRNA downstream 58410 75533240 ~ 75533910 (-) True G1409972
TU1610940 lncRNA downstream 108662 75482045 ~ 75483658 (-) False G1409951
TU1611045 lncRNA upstream 2266 75596286 ~ 75596588 (-) True G1410039
TU1611041 lncRNA upstream 2809 75596829 ~ 75597309 (-) True G1410036
TU1611060 lncRNA upstream 25314 75619334 ~ 75619603 (-) True G1410051
TU1611066 lncRNA upstream 42110 75636130 ~ 75636367 (-) True G1410057
TU1611072 lncRNA upstream 57612 75651632 ~ 75651831 (-) True G1410063
XM_036945806.1 mRNA downstream 219415 75371620 ~ 75372905 (-) True LOC118939468
XM_021564530.2 mRNA downstream 545347 75029607 ~ 75046973 (-) True LOC110491183
XM_036947807.1 mRNA downstream 576941 74986625 ~ 75015379 (-) False irak1
XR_005036630.1 mRNA upstream 6014 75600034 ~ 75615100 (-) False LOC110492917
XM_036947815.1 mRNA upstream 6014 75600034 ~ 75615122 (-) True LOC110492917
XM_036947820.1 mRNA upstream 510189 76104209 ~ 76119590 (-) False LOC110492699
XM_036947827.1 mRNA upstream 967237 76561257 ~ 76637349 (-) False LOC110492709
XM_036947824.1 mRNA upstream 967237 76561257 ~ 76642094 (-) False LOC110492709
TU1610916 other downstream 156780 75435054 ~ 75435540 (-) True G1409928
TU1610805 other downstream 222697 75368890 ~ 75369623 (-) True G1409847
TU1610267 other downstream 744383 74845104 ~ 74847937 (-) False G1409430
TU1610270 other downstream 744383 74845104 ~ 74847937 (-) False G1409430
TU1610209 other downstream 853131 74736433 ~ 74739189 (-) True G1409407
TU1611228 other upstream 161758 75755778 ~ 75756479 (-) True G1410190
TU1611257 other upstream 269809 75863829 ~ 75864456 (-) False G1410213
TU1611355 other upstream 346687 75940707 ~ 75941802 (-) False G1410288
TU1611577 other upstream 467049 76061069 ~ 76061732 (-) True G1410456
TU1611591 other upstream 510227 76104247 ~ 76111098 (-) True LOC110492699

Expression Profile