RNA id: TCONS_00046836


Basic Information

Item Value
RNA id TCONS_00046836
length 1051
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id XLOC_023206
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 42122536 ~ 42123841 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCGGCTCATTCTACCGGTGTACCGGCGTTTACCGTCACCGCAGAACTACAGCGGCGCAGGGTAACGGCTGAAGATGGCGGAGCGGTAACAGGCCTGATCCAGATTAAACCCGTTTAACGCTGCTgacagacataaacacacacacgcctgAACGAGTGTAAGAAACACACGGGTGTGTGAGACCGGacagctgtgtgtttgtgtgtatgtgtaatccGTGTGACAGttgcgtgcgtgtttgtgtgtgtgtgtgtgtgtgtcagctctgACAGTTTATCTGTCGTTTGGTTGCGCTGTGCTAATGTGTTAGCCTGTTAGCATGAGTTAGCGTATAAACGGCGGAATAAAGCGGTTTTCGGGCTGATTTAAGCACAGAGTGGACTCAGATGAACACCGAACcgaacacacacactcctctacACTCATTAGTGTGTGTTTGAAGAGTCATTAATGAGCTGCGCAGGCCGCAGACAAACACCGATACACACAGATCAGCAGGAGctcagctgaacacacacacacacacacacacctcagctGAACTATTACTGTTCACACACACTCTGCTCAATCAGTGTGTGTGACAACAGATCGCTCCTGCAGACCCAAACTGAACAACAACACAcaaactgagagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgttagcagtGTTTCTTCCATGAGCCCTCGGGTCAGAGGTCACCCAGCCGGCCATTGCTGATGGTCAACGCGGAAACTACACAAACTTCAGCCTGTGCTCGTCTGCAtgaATCATGGCTCGCAGTGACGGCTGAGGATCAGTGGCGTCTCTCACACACTTCTGACGTAAGTCCAGcagctcctgtgtgtgtgtgtgtgtgtgtgtgtcctgaagCGGGTGAGTTTAGCCAGATCAGGTCAGTGTGTTCGAGGAGTGTTGAAGGTGCTCCTGTTACCGTGGCAACAGAGTGAGCAATCTCCCGAACCGGCTTAACTGATCCAGCTCTGAGGAACCGACTGCTCTCACTGCGCCCCCTACAGGagaggagcacacacacacac

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0006518 peptide metabolic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0071541 eukaryotic translation initiation factor 3 complex, eIF3m cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0005840 ribosome cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047119 lncRNA upstream 29309 42091207 ~ 42093362 (+) True XLOC_023203
TCONS_00047115 lncRNA upstream 45705 42075993 ~ 42076966 (+) False XLOC_023202
TCONS_00047122 lncRNA downstream 280 42124121 ~ 42125758 (+) True XLOC_023207
TCONS_00045937 lncRNA downstream 9921 42133762 ~ 42138330 (+) False XLOC_023208
TCONS_00045938 lncRNA downstream 14510 42138351 ~ 42139093 (+) True XLOC_023208
TCONS_00045930 mRNA upstream 1617 42117231 ~ 42121054 (+) True XLOC_023205
TCONS_00045929 mRNA upstream 21071 42094833 ~ 42101600 (+) True XLOC_023204
TCONS_00045928 mRNA upstream 47184 42074143 ~ 42075487 (+) True XLOC_023201
TCONS_00045927 mRNA upstream 104428 42004640 ~ 42018243 (+) True XLOC_023200
TCONS_00045926 mRNA upstream 127995 41989108 ~ 41994676 (+) True XLOC_023199
TCONS_00045933 mRNA downstream 4142 42127983 ~ 42140381 (+) False XLOC_023208
TCONS_00045932 mRNA downstream 4142 42127983 ~ 42140381 (+) False XLOC_023208
TCONS_00045931 mRNA downstream 4142 42127983 ~ 42140381 (+) False XLOC_023208
TCONS_00045934 mRNA downstream 5934 42129775 ~ 42140381 (+) False XLOC_023208
TCONS_00045935 mRNA downstream 7723 42131564 ~ 42141008 (+) False XLOC_023208
TCONS_00045922 other upstream 411867 41710688 ~ 41710804 (+) True XLOC_023195
TCONS_00045919 other upstream 585480 41537062 ~ 41537191 (+) True XLOC_023192
TCONS_00045913 other upstream 1474299 40648256 ~ 40648372 (+) True XLOC_023180
TCONS_00045904 other upstream 2335107 39787473 ~ 39787564 (+) True XLOC_023169
TCONS_00045896 other upstream 2475600 39638589 ~ 39647071 (+) False XLOC_023163

Expression Profile

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