RNA id: TU1611589


Basic Information

Item Value
RNA id TU1611589
length 1190
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G1410468
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 76099667 ~ 76100856 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGAATCCAGTAGGTTCTGGAATCCAGTAGGTTCTGGTCGTCTTTAATTATTGATTCAAATGTTTGTATTTGATGTCAACTCAACAAAATAAGAAACGTCCTCTCagtgtcaactgcgtttattttcagcaaacttatgtgtaaatatttgtatgaccataaccagattcaacaactgagacacaaaGTGAAGAAGTTtcacagacatgtaactaacagaaatggaattatgtttccctgaacaaaggcgggggtcaaaatccaaagtaacagtcagtatctggtgtggccaccagctgcattaagtactgcagtgcgtgcagtacttaatgcatggactgcaccagatttgccagttcttgctgtgagatgttaccccactcttccaccaaggcacctgcaagttcccagacatttctgggggaatggccctagccctctccctccaatccaacaggtcccagacttgctcaatgggattccgatccgggctcttcgctggccatagcAGGATACTGACAttccttgcaggaaatcacacacagaacaagcagtatggctggtggcattgtcatgctggagggttatTTAAGAatgagtctgcaggaagggtaccacatgagggaggaggatgtcttccctgtaacgcacagcgttgagattgtctgcaatgacaacaagctaagtccgatgatgctgtgacacaccgccccagaccatgacggaccctccaaatcgatcccgctccagagtacaggcctcggtgtaactctcatcccttcgacgataaacgcaaatccgaccatcacccctgttgagacaaaaccgcgactcgtcagagaagagcactttttgccagtcctgtctgatccagcgacggtgggtttgcaACCATAGGCCACGTTGTTGCCAGtggtgtctggtgaggacctaccttacaacaggcctacaagccctcaatccagcctctctcagcttattgcggacagtctgagtacTGTTGGAGGGATtatgtgttcctggtgtaacttgggcagttgttatgcatctcacagtacggacattgcaatttattgccctggccacatccgctgtcttcatgcctccttgcagcatgcccaatgcacgcagatgagcagggaccccaggcatctttcttttggtgtttttcagagtcagtagaaagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1611586 lncRNA downstream 5615 76091431 ~ 76094052 (-) True G1410465
TU1611538 lncRNA downstream 79200 76020052 ~ 76020467 (-) True G1410428
TU1611523 lncRNA downstream 91351 76004661 ~ 76008316 (-) False G1410422
TU1611592 lncRNA upstream 171 76101027 ~ 76102220 (-) True G1410470
TU1611594 lncRNA upstream 7187 76108043 ~ 76109361 (-) True G1410472
TU1611600 lncRNA upstream 26925 76127781 ~ 76128095 (-) True G1410478
TU1611618 lncRNA upstream 93888 76194744 ~ 76195033 (-) True G1410495
TU1611642 lncRNA upstream 107372 76208228 ~ 76252231 (-) False G1410518
XM_036947815.1 mRNA downstream 484545 75600034 ~ 75615122 (-) True LOC110492917
XR_005036630.1 mRNA downstream 484567 75600034 ~ 75615100 (-) False LOC110492917
XM_036945806.1 mRNA downstream 726762 75371620 ~ 75372905 (-) True LOC118939468
XM_021564530.2 mRNA downstream 1052694 75029607 ~ 75046973 (-) True LOC110491183
XM_036947809.1 mRNA downstream 1084288 74986625 ~ 75015379 (-) True irak1
XM_036947820.1 mRNA upstream 3353 76104209 ~ 76119590 (-) False LOC110492699
XM_036947827.1 mRNA upstream 460401 76561257 ~ 76637349 (-) False LOC110492709
XM_036947824.1 mRNA upstream 460401 76561257 ~ 76642094 (-) False LOC110492709
XM_036947825.1 mRNA upstream 460401 76561257 ~ 76642094 (-) False LOC110492709
XM_036947826.1 mRNA upstream 460401 76561257 ~ 76642094 (-) False LOC110492709
TU1611577 other downstream 37935 76061069 ~ 76061732 (-) True G1410456
TU1611355 other downstream 157865 75940707 ~ 75941802 (-) False G1410288
TU1611257 other downstream 235211 75863829 ~ 75864456 (-) False G1410213
TU1611228 other downstream 343188 75755778 ~ 75756479 (-) True G1410190
TU1610916 other downstream 664127 75435054 ~ 75435540 (-) True G1409928
TU1611591 other upstream 3391 76104247 ~ 76111098 (-) True LOC110492699
TU1611610 other upstream 63787 76164643 ~ 76165488 (-) True G1410487
TU1611696 other upstream 152365 76253221 ~ 76278240 (-) False G1410557
TU1611711 other upstream 152365 76253221 ~ 76259046 (-) False G1410557
TU1611714 other upstream 154060 76254916 ~ 76274025 (-) False G1410557

Expression Profile