RNA id: TU1611642


Basic Information

Item Value
RNA id TU1611642
length 373
lncRNA type inter_gene
GC content 0.59
exon number 4
gene id G1410518
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 76208228 ~ 76252231 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtctggtctcagaccatcccacaggtgaagaggccaggtgtctggtctcagaccatcccacaggtgaagaggccaggtgtctggactcagaccatcccacaggtgaagaggccaggtgtctggtctcagaccatcccacaggtgaagaggccgggtgtctggtctcagaccatcccacaggtgaagagaccaggtgtctggtctcagaccatcccacaggtgaagaggccaggtgtctggtctcagaccatcccacaggtgaagaggccgggtgtctggtctcagaccatcccacaggtgaagaggccgggtgtctggtctcagatcatcccacaggtgaagaggccaggtgtctggactcagaccatccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1611618 lncRNA downstream 13195 76194744 ~ 76195033 (-) True G1410495
TU1611600 lncRNA downstream 80133 76127781 ~ 76128095 (-) True G1410478
TU1611594 lncRNA downstream 98867 76108043 ~ 76109361 (-) True G1410472
TU1611592 lncRNA downstream 106008 76101027 ~ 76102220 (-) True G1410470
TU1611589 lncRNA downstream 107372 76099667 ~ 76100856 (-) True G1410468
TU1611697 lncRNA upstream 990 76253221 ~ 76282347 (-) False G1410557
TU1611703 lncRNA upstream 990 76253221 ~ 76259046 (-) False G1410557
TU1611704 lncRNA upstream 990 76253221 ~ 76300195 (-) False G1410557
TU1611712 lncRNA upstream 990 76253221 ~ 76300195 (-) False G1410557
TU1611720 lncRNA upstream 990 76253221 ~ 76299383 (-) False G1410557
XM_036947820.1 mRNA downstream 88638 76104209 ~ 76119590 (-) False LOC110492699
XM_036947815.1 mRNA downstream 593106 75600034 ~ 75615122 (-) True LOC110492917
XR_005036630.1 mRNA downstream 593128 75600034 ~ 75615100 (-) False LOC110492917
XM_036945806.1 mRNA downstream 835323 75371620 ~ 75372905 (-) True LOC118939468
XM_021564530.2 mRNA downstream 1161255 75029607 ~ 75046973 (-) True LOC110491183
XM_036947827.1 mRNA upstream 309026 76561257 ~ 76637349 (-) False LOC110492709
XM_036947824.1 mRNA upstream 309026 76561257 ~ 76642094 (-) False LOC110492709
XM_036947825.1 mRNA upstream 309026 76561257 ~ 76642094 (-) False LOC110492709
XM_036947826.1 mRNA upstream 309026 76561257 ~ 76642094 (-) False LOC110492709
XR_005036632.1 mRNA upstream 309026 76561257 ~ 76642094 (-) True LOC110492709
TU1611610 other downstream 42740 76164643 ~ 76165488 (-) True G1410487
TU1611591 other downstream 97130 76104247 ~ 76111098 (-) True LOC110492699
TU1611577 other downstream 146496 76061069 ~ 76061732 (-) True G1410456
TU1611355 other downstream 266426 75940707 ~ 75941802 (-) False G1410288
TU1611257 other downstream 343772 75863829 ~ 75864456 (-) False G1410213
TU1611696 other upstream 990 76253221 ~ 76278240 (-) False G1410557
TU1611711 other upstream 990 76253221 ~ 76259046 (-) False G1410557
TU1611714 other upstream 2685 76254916 ~ 76274025 (-) False G1410557
TU1611716 other upstream 2685 76254916 ~ 76308844 (-) False G1410557
TU1611706 other upstream 37924 76290155 ~ 76311947 (-) True G1410557

Expression Profile