RNA id: TU1611720


Basic Information

Item Value
RNA id TU1611720
length 1256
lncRNA type inter_gene
GC content 0.37
exon number 4
gene id G1410557
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 76253221 ~ 76311947 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcaggtctattatccacatggaactaaaatacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaatacatcaggtctattatccacatggagataaaagaggagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagaggagacatcaggtctattatccacatggagataaaagaggagacatcaggtctattatccacatggaactaaaagacagcaggtctattatccacatggagataaaagaggagacatcaggtctactatccacatggaactaaaagacgtcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacaccaggtctattatccacatggagataaaagaggagacatcaggtatattatccacatggagataaaagacatcaggtatattatccacatggagataaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtatattatccacatggaactaaaagacatcaggtctattatccacatggaaatAAAAGAcagcaggtctattatccacatggagataaaagagtagacatcaggtctattatccacatggagataagggacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacagcaggtctattatccacatggaactcaaagagagacatcaggtctattatccacatggaactaaaagacatccaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggatactaaaagaggagacatcaggtctattatccacatggaactaaaagacatcaggtctattaatCCACacggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctgttatccacatggaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1611642 lncRNA downstream 990 76208228 ~ 76252231 (-) False G1410518
TU1611641 lncRNA downstream 35121 76216525 ~ 76218100 (-) True G1410518
TU1611645 lncRNA downstream 38297 76210563 ~ 76214924 (-) True G1410520
TU1611618 lncRNA downstream 58188 76194744 ~ 76195033 (-) True G1410495
TU1611600 lncRNA downstream 125126 76127781 ~ 76128095 (-) True G1410478
TU1611730 lncRNA upstream 22893 76322276 ~ 76324000 (-) True G1410567
TU1611735 lncRNA upstream 38147 76337530 ~ 76337854 (-) True G1410571
TU1611740 lncRNA upstream 66180 76365563 ~ 76366016 (-) True G1410573
TU1611751 lncRNA upstream 92196 76391579 ~ 76391896 (-) True G1410584
TU1611752 lncRNA upstream 113029 76412412 ~ 76412685 (-) True G1410585
XM_036947820.1 mRNA downstream 133631 76104209 ~ 76119590 (-) False LOC110492699
XM_036947815.1 mRNA downstream 638099 75600034 ~ 75615122 (-) True LOC110492917
XR_005036630.1 mRNA downstream 638121 75600034 ~ 75615100 (-) False LOC110492917
XM_036945806.1 mRNA downstream 880316 75371620 ~ 75372905 (-) True LOC118939468
XM_021564530.2 mRNA downstream 1206248 75029607 ~ 75046973 (-) True LOC110491183
XM_036947827.1 mRNA upstream 261874 76561257 ~ 76637349 (-) False LOC110492709
XM_036947824.1 mRNA upstream 261874 76561257 ~ 76642094 (-) False LOC110492709
XM_036947825.1 mRNA upstream 261874 76561257 ~ 76642094 (-) False LOC110492709
XM_036947826.1 mRNA upstream 261874 76561257 ~ 76642094 (-) False LOC110492709
XR_005036632.1 mRNA upstream 261874 76561257 ~ 76642094 (-) True LOC110492709
TU1611610 other downstream 87733 76164643 ~ 76165488 (-) True G1410487
TU1611591 other downstream 142123 76104247 ~ 76111098 (-) True LOC110492699
TU1611577 other downstream 191489 76061069 ~ 76061732 (-) True G1410456
TU1611355 other downstream 311419 75940707 ~ 75941802 (-) False G1410288
TU1611257 other downstream 388765 75863829 ~ 75864456 (-) False G1410213
TU1611897 other upstream 257657 76557040 ~ 76558174 (-) False G1410696
TU1611910 other upstream 343397 76642780 ~ 76645664 (-) True G1410701
TU1612017 other upstream 493037 76792420 ~ 76795053 (-) True G1410773
TU1612024 other upstream 496200 76795583 ~ 76795880 (-) False G1410776
TU1612028 other upstream 496983 76796366 ~ 76797111 (-) True G1410776

Expression Profile