RNA id: TU1611700


Basic Information

Item Value
RNA id TU1611700
length 1053
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G1410557
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 76253221 ~ 76311947 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atcaggtctattatccacatggaactaaaatacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaatacatcaggtctattatccacatggagataaaagaggagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagaggagacatcaggtctattatccacatggagataaaagaggagacatcaggtctattatacacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctgttatccacatggagataaaagaggagacatcaggtctattatccacatggagataaaagacatcaggtctattatccacatggagataaaagacattagatcaggtctgttatccacatggaactaaaagacatcaggtctgttatccacatggaactaaaagacatcaggtctattatccacatggaactaaaatacatcaggtctgttatccacatggaactaaaatacatcaggtctattatccacatggaactaaaagacatcaggtctattatcaacatggaactaaaagacattaggtctattatccacatggaactaaaagacatcaggtctattatccacatggagataaaagaggagacatcaggtctaatatccacatggaactaaaagacatcaggtctataatccacatggaactaaaagacatcaggtctataatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggagataaaagacatcaggtctattatccacatggagattaaagacatcaggtctattatccacatggaactaaaagacatcaggtctattatccacatggaactaaaagacatcaggtctgttatccacatggagataaaagaggagacatcaggtctattatccacatggaactaaaagaggcgacatcaggtctattatccacatgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1611697 lncRNA downstream 4195 76253221 ~ 76282347 (-) False G1410557
TU1611708 lncRNA downstream 6363 76253741 ~ 76280179 (-) False G1410557
TU1611702 lncRNA downstream 10061 76254916 ~ 76276481 (-) False G1410557
TU1611721 lncRNA downstream 25881 76256976 ~ 76260661 (-) True G1410558
TU1611703 lncRNA downstream 27496 76253221 ~ 76259046 (-) False G1410557
TU1611730 lncRNA upstream 22893 76322276 ~ 76324000 (-) True G1410567
TU1611735 lncRNA upstream 38147 76337530 ~ 76337854 (-) True G1410571
TU1611740 lncRNA upstream 66180 76365563 ~ 76366016 (-) True G1410573
TU1611751 lncRNA upstream 92196 76391579 ~ 76391896 (-) True G1410584
TU1611752 lncRNA upstream 113029 76412412 ~ 76412685 (-) True G1410585
XM_036947820.1 mRNA downstream 166952 76104209 ~ 76119590 (-) False LOC110492699
XM_036947815.1 mRNA downstream 671420 75600034 ~ 75615122 (-) True LOC110492917
XR_005036630.1 mRNA downstream 671442 75600034 ~ 75615100 (-) False LOC110492917
XM_036945806.1 mRNA downstream 913637 75371620 ~ 75372905 (-) True LOC118939468
XM_021564530.2 mRNA downstream 1239569 75029607 ~ 75046973 (-) True LOC110491183
XM_036947827.1 mRNA upstream 261874 76561257 ~ 76637349 (-) False LOC110492709
XM_036947824.1 mRNA upstream 261874 76561257 ~ 76642094 (-) False LOC110492709
XM_036947825.1 mRNA upstream 261874 76561257 ~ 76642094 (-) False LOC110492709
XM_036947826.1 mRNA upstream 261874 76561257 ~ 76642094 (-) False LOC110492709
XR_005036632.1 mRNA upstream 261874 76561257 ~ 76642094 (-) True LOC110492709
TU1611696 other downstream 8302 76253221 ~ 76278240 (-) False G1410557
TU1611714 other downstream 12517 76254916 ~ 76274025 (-) False G1410557
TU1611711 other downstream 27496 76253221 ~ 76259046 (-) False G1410557
TU1611610 other downstream 121054 76164643 ~ 76165488 (-) True G1410487
TU1611591 other downstream 175444 76104247 ~ 76111098 (-) True LOC110492699
TU1611897 other upstream 257657 76557040 ~ 76558174 (-) False G1410696
TU1611910 other upstream 343397 76642780 ~ 76645664 (-) True G1410701
TU1612017 other upstream 493037 76792420 ~ 76795053 (-) True G1410773
TU1612024 other upstream 496200 76795583 ~ 76795880 (-) False G1410776
TU1612028 other upstream 496983 76796366 ~ 76797111 (-) True G1410776

Expression Profile