RNA id: TU1611897



Basic Information


Item Value
RNA id TU1611897
length 852
RNA type TUCP
GC content 0.52
exon number 2
gene id G1410696
representative False

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 76557040 ~ 76558174 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTGAATTCCCTGAACCAGTGAAAAACCATGTGAATTCCCTGAACCAGTGAAAAACCATGTGAATTCCCTGAACCAGTGAAAAACCATGTGAATTCCCTTCATCAGTGAAAAACCATGTGAATTCCCTTCATCAGTGAAAAACCATGTGAATTCCCTTCATCAGTGAAAAACAAGGCCACGACAAGCAACAAGCAGTGGTTAGACACCATGCCGGCTCAATGAGAAACCAAGATGGCGGTGTGCCTGTAACCGTGCGATGGAGAAACAGAGGTGAGGACTGAATGAGCAGGTGGTTTGGAACAGTTAGAACAcatggaatggagagaggaaaTAAAGACCCCGGAACCAACTGGAATGAAGAGCGATGCAGAAAAATGGGTACAAAGGAAATCTGACAAATACACAATCTTCAATAGAAATGGAATAAAGGAGAAGGTGGAGAAAGGTTCAGGAAAGAGGTACGTCATTTCACACCTCAGACTGCAGAGGGAGGGGGTAACaggccagaggggggggggtgacaggccagagagggagggagggggggtgacaGATGGTATGAGAGCAGAGAAGAGTTGTGGTTATCCCAAATgtccccctatatagtgcactactttaaaccagggcccaTCGGCCGTCTCAGTTGGCGAAGGTCTGGCGCACGGCGTTGGCGATGTGTTTGGCGCTGATGCCGTACAGGTCCAGGAGCTCCTGAGGTTTTCCACTCCGGGGTATACGGTTCACCGCCAGGCGCGTCACCATGATACCAGGCTCCTCCCCCACCGCAGACAGCACCGCCTCCCCAAGACCACCTGGTGACAGAGGTAGAGGGGGGTTAGAACACAGGGCCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1611914 lncRNA downstream 12178 76543171 ~ 76544862 (-) True G1410705
TU1611756 lncRNA downstream 137726 76419064 ~ 76419314 (-) True G1410588
TU1611754 lncRNA downstream 138048 76414286 ~ 76418992 (-) False G1410587
TU1611755 lncRNA downstream 138048 76414286 ~ 76418992 (-) True G1410587
TU1611752 lncRNA downstream 144355 76412412 ~ 76412685 (-) True G1410585
TU1611899 lncRNA upstream 1295 76559469 ~ 76559727 (-) True G1410697
TU1611920 lncRNA upstream 13129 76571303 ~ 76575833 (-) True G1410711
TU1611921 lncRNA upstream 21522 76579696 ~ 76583672 (-) True G1410712
TU1611923 lncRNA upstream 46279 76604453 ~ 76604695 (-) True G1410714
TU1611916 lncRNA upstream 48738 76606912 ~ 76607254 (-) True G1410707
XM_036947820.1 mRNA downstream 437450 76104209 ~ 76119590 (-) False LOC110492699
XM_036947815.1 mRNA downstream 941918 75600034 ~ 75615122 (-) True LOC110492917
XR_005036630.1 mRNA downstream 941940 75600034 ~ 75615100 (-) False LOC110492917
XM_036945806.1 mRNA downstream 1184135 75371620 ~ 75372905 (-) True LOC118939468
XM_021564530.2 mRNA downstream 1510067 75029607 ~ 75046973 (-) True LOC110491183
XM_036947827.1 mRNA upstream 3083 76561257 ~ 76637349 (-) False LOC110492709
XM_036947824.1 mRNA upstream 3083 76561257 ~ 76642094 (-) False LOC110492709
XM_036947825.1 mRNA upstream 3083 76561257 ~ 76642094 (-) False LOC110492709
XM_036947826.1 mRNA upstream 3083 76561257 ~ 76642094 (-) False LOC110492709
XR_005036632.1 mRNA upstream 3083 76561257 ~ 76642094 (-) True LOC110492709
TU1611706 other downstream 245093 76290155 ~ 76311947 (-) True G1410557
TU1611716 other downstream 248196 76254916 ~ 76308844 (-) False G1410557
TU1611696 other downstream 278800 76253221 ~ 76278240 (-) False G1410557
TU1611714 other downstream 283015 76254916 ~ 76274025 (-) False G1410557
TU1611711 other downstream 297994 76253221 ~ 76259046 (-) False G1410557
TU1611910 other upstream 84606 76642780 ~ 76645664 (-) True G1410701
TU1612017 other upstream 234246 76792420 ~ 76795053 (-) True G1410773
TU1612024 other upstream 237409 76795583 ~ 76795880 (-) False G1410776
TU1612028 other upstream 238192 76796366 ~ 76797111 (-) True G1410776
TU1612210 other upstream 403296 76961470 ~ 76972119 (-) True G1410911

Expression Profile