RNA id: TU1611967


Basic Information

Item Value
RNA id TU1611967
length 1206
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G1410734
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 76700484 ~ 76703457 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caacaactctgctaccccCCCCCTCAACAACTCCGCTACCCTccccccctcaacaactctgctaccccccccccctcaacaactctgctaccccCCCCATCAACAACTCTTCTACCCTCCCCACTCAGTACTGCCGTGTCAGGGCCAACGTGGCACGTCCTTCCCTGTTCACCCCTGACCCCTGCGTTGTGATGTGGCACGTCCTTCCCTGTTCTCCCCTGACCCCTGCGTTGTGATGTGGAACGTCCTTCCCTGTTCACCCCTGACCCCTGCGTTGTGATGTGGAACGTCCTTCCCTGTTCACCCCTGACCCCTGCGTTGTGATGTGGAACGTCCTTCCCCGTTCTCCCCTGACCCCTGCGTTGTGATGTGGAACGTCCTTCCCTGTTCACCCCTGACCCCTGCGTTGTGATGTGGAACGTCCTTCCCTGTTCACCCCTGACCCCTGCGTTGTGATGTGGAACGTCCTTCCCTGTTCACCCCTGACCCCTGCGTTGTGACGTGGCACGTCCTTCCCTGTTCTCCCCTGACCCCTGCGTTGTGACGTGGAACGTCCTTCCCTGTTCTCCCCTGACCCCTGCGTTGTGATGTGGAACGTCCTTCCCTGTTCACCCCTGACCCCTGCGTTGTGACGTGGCACGTCCTTCCCTGTTCACCCCTGACCCCTGCGTTGTGATGTCATCTGACCAGTAGTGGCAAACAAAACTTAACTGGAACGAACATCTCTAAGGATTTTATAAATTTTGGGAAACAGAAATCCAGGAAACAACCGTAAAATGTCACTTGGATTGTATTTGAAGTGTAAAATGGGGGATCTGTGAATAAAGAGGACCTCTTGACTGCCCCTGACTGTAACATAACCTGGGAGGGGGGCAGACTGAACGACCGGGACCCCCAGGGTTGGTATTTTAACAGGTGTGTCTCTGCCTCCTTCCCCCCCCTTCTATCTAGTTCCTAAAGGTGGGAGGAGGgattgtgggggtgggggggggacagGTGTTTAAACATGACTTGAGTTTTCAATTTGATTTTCCATTTAATTTTATTTTAGGATGGACTCGTGTGTTTGCCGGGCCACAACCTTTAGGAACATTCTGTCTCGTTCCGTCTGCTTTTTAAACTCCACTGTGTCGACAGGTGGAGTCGGTCTGGTAGAGCTGTCATGGGAACACTGAGTGTGATCAATAAATACATTGAATTGAATAA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1611974 lncRNA downstream 25813 76674289 ~ 76674671 (-) True G1410739
TU1611947 lncRNA downstream 45407 76651871 ~ 76655077 (-) False G1410732
TU1611948 lncRNA downstream 45732 76651871 ~ 76654752 (-) False G1410732
TU1611949 lncRNA downstream 45732 76651871 ~ 76654752 (-) True G1410732
TU1611941 lncRNA downstream 69664 76630512 ~ 76630820 (-) True G1410726
TU1611987 lncRNA upstream 46207 76748234 ~ 76749205 (-) True G1410750
TU1611990 lncRNA upstream 55633 76757660 ~ 76757962 (-) True G1410753
TU1612002 lncRNA upstream 73262 76775289 ~ 76775541 (-) True G1410763
TU1612012 lncRNA upstream 77491 76779518 ~ 76780764 (-) False G1410771
TU1612015 lncRNA upstream 77491 76779518 ~ 76795451 (-) True G1410771
XM_036947828.1 mRNA downstream 6726 76657903 ~ 76693758 (-) True usp21
XM_036947824.1 mRNA downstream 58390 76561257 ~ 76642094 (-) False LOC110492709
XM_036947834.1 mRNA upstream 3762 76705789 ~ 76743937 (-) False LOC110514470
XM_036947833.1 mRNA upstream 3762 76705789 ~ 76756145 (-) False LOC110514470
XM_036947829.1 mRNA upstream 3762 76705789 ~ 76756146 (-) False LOC110514470
XM_036947830.1 mRNA upstream 3762 76705789 ~ 76756146 (-) False LOC110514470
XM_036947832.1 mRNA upstream 3762 76705789 ~ 76756146 (-) False LOC110514470
TU1611910 other downstream 54820 76642780 ~ 76645664 (-) True G1410701
TU1611897 other downstream 142310 76557040 ~ 76558174 (-) False G1410696
TU1611706 other downstream 388537 76290155 ~ 76311947 (-) True G1410557
TU1611716 other downstream 391640 76254916 ~ 76308844 (-) False G1410557
TU1611714 other downstream 426459 76254916 ~ 76274025 (-) False G1410557
TU1612017 other upstream 90393 76792420 ~ 76795053 (-) True G1410773
TU1612024 other upstream 93556 76795583 ~ 76795880 (-) False G1410776
TU1612028 other upstream 94339 76796366 ~ 76797111 (-) True G1410776
TU1612210 other upstream 259443 76961470 ~ 76972119 (-) True G1410911
TU1612655 other upstream 463431 77165458 ~ 77165823 (-) True G1411281

Expression Profile