RNA id: TU1611990



Basic Information


Item Value
RNA id TU1611990
length 303
lncRNA type intronic
GC content 0.48
exon number 1
gene id G1410753
representative True

Chromosome Information


Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 76757660 ~ 76757962 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtttactctgggcacctctgggcacctttcatccaagctactcaatactgcccctgcagccataagaagttaagacactacagcttacagactgtatgcaattaaggtcagttatgaaaactaaggacactaaagaggcctttctacagactctgaaaaacacaaagaaagatgcccagagtccTTGCCcttctgcgtgaacgtgccttaggcatgctgcaaggaggcatgaggactgcagatgtggccagggcaataaattgcaatgtccgtactgtgagacgcctaagacagcactacggC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1611987 lncRNA downstream 8455 76748234 ~ 76749205 (-) True G1410750
TU1611959 lncRNA downstream 54203 76700484 ~ 76703457 (-) False G1410734
TU1611962 lncRNA downstream 54203 76700484 ~ 76703457 (-) False G1410734
TU1611967 lncRNA downstream 55633 76700484 ~ 76702027 (-) True G1410734
TU1611974 lncRNA downstream 82989 76674289 ~ 76674671 (-) True G1410739
TU1612002 lncRNA upstream 17327 76775289 ~ 76775541 (-) True G1410763
TU1612012 lncRNA upstream 21556 76779518 ~ 76780764 (-) False G1410771
TU1612015 lncRNA upstream 21556 76779518 ~ 76795451 (-) True G1410771
TU1612023 lncRNA upstream 37683 76795645 ~ 76795880 (-) False G1410776
TU1612022 lncRNA upstream 37715 76795677 ~ 76795880 (-) False G1410776
XM_036947829.1 mRNA downstream 1514 76705789 ~ 76756146 (-) False LOC110514470
XM_036947830.1 mRNA downstream 1514 76705789 ~ 76756146 (-) False LOC110514470
XM_036947832.1 mRNA downstream 1514 76705789 ~ 76756146 (-) False LOC110514470
XM_036947833.1 mRNA downstream 1515 76705789 ~ 76756145 (-) False LOC110514470
XM_036947834.1 mRNA downstream 13723 76705789 ~ 76743937 (-) False LOC110514470
XM_036947835.1 mRNA upstream 49189 76807151 ~ 76997020 (-) True LOC118939598
XM_021567163.2 mRNA upstream 344118 77102080 ~ 77104717 (-) False LOC110492706
XM_036945807.1 mRNA upstream 380727 77138689 ~ 77144798 (-) True LOC110491186
XM_036947837.1 mRNA upstream 735898 77493860 ~ 77577462 (-) False ikbkg
XM_036947839.1 mRNA upstream 735898 77493860 ~ 77582329 (-) False ikbkg
TU1611910 other downstream 111996 76642780 ~ 76645664 (-) True G1410701
TU1611897 other downstream 199486 76557040 ~ 76558174 (-) False G1410696
TU1611706 other downstream 445713 76290155 ~ 76311947 (-) True G1410557
TU1611716 other downstream 448816 76254916 ~ 76308844 (-) False G1410557
TU1611714 other downstream 483635 76254916 ~ 76274025 (-) False G1410557
TU1612017 other upstream 34458 76792420 ~ 76795053 (-) True G1410773
TU1612024 other upstream 37621 76795583 ~ 76795880 (-) False G1410776
TU1612028 other upstream 38404 76796366 ~ 76797111 (-) True G1410776
TU1612210 other upstream 203508 76961470 ~ 76972119 (-) True G1410911
TU1612655 other upstream 407496 77165458 ~ 77165823 (-) True G1411281

Expression Profile