RNA id: TU1612015


Basic Information

Item Value
RNA id TU1612015
length 868
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G1410771
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 76779518 ~ 76795451 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCAATCCCCATCCTCCAGGCCAGGGAAGGGCCTataagttacagtcttgtctcatcgctgcaactcccgtacggactcgggagaggcgaaggtcgagagccgcgcGTCCcttgaaacacaacccaacacaatgcccacttaacccggaagccagccgcaccaatgtgtcggaggaaacaccataacacctggcgaccgtgtcagcgtgcactgtgcccggcccgccacaggagtcactagagcgcaatgggacaagaacatccctgccggccaaaccctcccctaacccggacgacactgggccaaaccctcccctaacccggacgacactgggccaaaccctcccctaacccggacgacactaggccaaaccctcccctaacccggacgacactgggccaaacctttcccctaacccggacgacactgggccaaaccctcccctaacccggacgacactgggccaaaccctcccctaacccggacgacactgggccaaaccctcccctaacccggacgacactgggccaaacctttcccctaacccggacgacactgggccaattgtgtgcctgccccatgggcctcccggtcacggccggctgtgacagagcctggactcgaaccagggtcTCTACTAGCCTTAGACCActacaccactcgggaggcccttgtTGACTGGTTTTGATCATGTTGAACTTGATTGATTCTACTGTATACTGCTTTGTTCATGTTCTTCTGATGTGAATAATATCTTTGTTTCTTTCTGTAAACTTCTTGAGACCCTCTCAGATGTTGGCCTGCCACCTGTCCTTATTCTTAataaggtctgtctgtctgtctttgaatAAAAAGTTCAGAACTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1612002 lncRNA downstream 3977 76775289 ~ 76775541 (-) True G1410763
TU1611990 lncRNA downstream 21556 76757660 ~ 76757962 (-) True G1410753
TU1611987 lncRNA downstream 30313 76748234 ~ 76749205 (-) True G1410750
TU1611962 lncRNA downstream 76061 76700484 ~ 76703457 (-) False G1410734
TU1612023 lncRNA upstream 194 76795645 ~ 76795880 (-) False G1410776
TU1612022 lncRNA upstream 226 76795677 ~ 76795880 (-) False G1410776
TU1612144 lncRNA upstream 23122 76818573 ~ 76841859 (-) True G1410858
TU1612146 lncRNA upstream 23678 76819129 ~ 76857456 (-) True G1410859
TU1612150 lncRNA upstream 24650 76820101 ~ 76861888 (-) True G1410861
XM_036947831.1 mRNA downstream 4754 76705789 ~ 76774764 (-) True LOC110514470
XM_036947829.1 mRNA downstream 23372 76705789 ~ 76756146 (-) False LOC110514470
XM_036947830.1 mRNA downstream 23372 76705789 ~ 76756146 (-) False LOC110514470
XM_036947832.1 mRNA downstream 23372 76705789 ~ 76756146 (-) False LOC110514470
XM_036947833.1 mRNA downstream 23373 76705789 ~ 76756145 (-) False LOC110514470
XM_036947835.1 mRNA upstream 11700 76807151 ~ 76997020 (-) True LOC118939598
XM_021567163.2 mRNA upstream 306629 77102080 ~ 77104717 (-) False LOC110492706
XM_036945807.1 mRNA upstream 343238 77138689 ~ 77144798 (-) True LOC110491186
XM_036947837.1 mRNA upstream 698409 77493860 ~ 77577462 (-) False ikbkg
XM_036947839.1 mRNA upstream 698409 77493860 ~ 77582329 (-) False ikbkg
TU1611910 other downstream 133854 76642780 ~ 76645664 (-) True G1410701
TU1611897 other downstream 221344 76557040 ~ 76558174 (-) False G1410696
TU1611706 other downstream 467571 76290155 ~ 76311947 (-) True G1410557
TU1611716 other downstream 470674 76254916 ~ 76308844 (-) False G1410557
TU1611714 other downstream 505493 76254916 ~ 76274025 (-) False G1410557
TU1612024 other upstream 132 76795583 ~ 76795880 (-) False G1410776
TU1612028 other upstream 915 76796366 ~ 76797111 (-) True G1410776
TU1612210 other upstream 166019 76961470 ~ 76972119 (-) True G1410911
TU1612655 other upstream 370007 77165458 ~ 77165823 (-) True G1411281
TU1612750 other upstream 554102 77349553 ~ 77351225 (-) True G1411366

Expression Profile